Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 AL023284.1-201ENST00000403956 276 ntBASIC2□□□□□ -2.09
NPAS1Q99742 Y_RNA.621-201ENST00000411065 96 ntBASIC2□□□□□ -2.09
NPAS1Q99742 AC069257.2-201ENST00000441819 155 ntBASIC2□□□□□ -2.09
NPAS1Q99742 HSPE1P13-201ENST00000451143 297 ntBASIC2□□□□□ -2.09
NPAS1Q99742 AC233266.1-201ENST00000454518 96 ntBASIC2□□□□□ -2.09
NPAS1Q99742 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2□□□□□ -2.09
NPAS1Q99742 MIR4513-201ENST00000581077 86 ntBASIC2□□□□□ -2.09
NPAS1Q99742 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2□□□□□ -2.09
NPAS1Q99742 AC242852.1-201ENST00000612151 96 ntBASIC2□□□□□ -2.09
NPAS1Q99742 AC244015.1-201ENST00000622301 99 ntBASIC2□□□□□ -2.09
NPAS1Q99742 AC064859.1-201ENST00000624741 174 ntBASIC2□□□□□ -2.09
NPAS1Q99742 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
NPAS1Q99742 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.99□□□□□ -2.09
NPAS1Q99742 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
NPAS1Q99742 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
NPAS1Q99742 Y_RNA.136-201ENST00000363444 102 ntBASIC1.99□□□□□ -2.09
NPAS1Q99742 Y_RNA.267-201ENST00000364679 109 ntBASIC1.99□□□□□ -2.09
NPAS1Q99742 RNA5SP511-201ENST00000410487 115 ntBASIC1.99□□□□□ -2.09
NPAS1Q99742 RNU6-191P-201ENST00000516295 94 ntBASIC1.99□□□□□ -2.09
NPAS1Q99742 AC009831.4-201ENST00000620744 325 ntBASIC1.99□□□□□ -2.09
NPAS1Q99742 AC068647.2-201ENST00000637380 353 ntBASIC1.99□□□□□ -2.09
NPAS1Q99742 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.99□□□□□ -2.09
NPAS1Q99742 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
NPAS1Q99742 AL359851.1-201ENST00000569460 4997 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
NPAS1Q99742 SNORA16B-201ENST00000364674 135 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 Y_RNA.452-201ENST00000384202 108 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 SNORA67.3-201ENST00000384366 140 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 MIR520A-201ENST00000384862 85 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 RN7SKP223-201ENST00000410582 62 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 RPL23AP6-201ENST00000446637 472 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 RNU7-94P-201ENST00000459576 63 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 AC091959.1-201ENST00000495857 238 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.98□□□□□ -2.09
NPAS1Q99742 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.98□□□□□ -2.09
NPAS1Q99742 MIR4435-1-201ENST00000582552 80 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 AP001282.2-201ENST00000616149 309 ntBASIC1.98□□□□□ -2.09
NPAS1Q99742 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
NPAS1Q99742 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
NPAS1Q99742 Y_RNA.172-201ENST00000363765 102 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 RNA5SP138-201ENST00000365098 114 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 Y_RNA.456-201ENST00000384232 111 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 RNU6-662P-201ENST00000384253 104 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 RNU6-472P-201ENST00000384299 107 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 SNORD116-13-201ENST00000384408 92 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 SNORA64-201ENST00000384674 134 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 AL512604.1-201ENST00000404812 257 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 RNA5SP338-201ENST00000410495 85 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 RNU2-38P-201ENST00000410856 79 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 RPS20P10-201ENST00000451209 253 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 SNORD127-201ENST00000458892 86 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.97□□□□□ -2.09
NPAS1Q99742 AC005972.2-201ENST00000604690 348 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 AC062037.2-201ENST00000610137 73 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 uc_338.20-201ENST00000621563 178 ntBASIC1.97□□□□□ -2.09
NPAS1Q99742 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
NPAS1Q99742 Y_RNA.193-201ENST00000363979 102 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 Y_RNA.361-201ENST00000365515 120 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 MIR17-201ENST00000385012 84 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 RNA5SP109-201ENST00000391010 116 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 RNA5SP212-201ENST00000391223 107 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 RNU6-1132P-201ENST00000459214 107 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 RPL39P38-201ENST00000467018 153 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 RNU1-41P-201ENST00000516161 162 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 RNU1-48P-201ENST00000516400 162 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 SNORA27.4-201ENST00000516650 95 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 MIR5002-201ENST00000584713 97 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 MIR6079-201ENST00000635807 62 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.96□□□□□ -2.1
NPAS1Q99742 AC018630.2-201ENST00000534866 2403 ntBASIC1.96□□□□□ -2.1
NPAS1Q99742 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.95□□□□□ -2.1
NPAS1Q99742 AC134026.1-201ENST00000623249 2239 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 MIR335-201ENST00000362173 94 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 Y_RNA.44-201ENST00000362676 108 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 Y_RNA.368-201ENST00000365547 113 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 Y_RNA.477-201ENST00000384352 108 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 MTCO2P33-201ENST00000402100 465 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 AL158823.1-201ENST00000418441 478 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 RNU6-717P-201ENST00000459076 104 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 AC091021.1-201ENST00000468051 388 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 RPL36AP21-201ENST00000490372 323 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 SCARNA16.3-201ENST00000516595 184 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 RNU6-1096P-201ENST00000517089 102 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 AC136628.3-201ENST00000521868 290 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.95□□□□□ -2.1
NPAS1Q99742 AC004817.2-201ENST00000561794 651 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 SUB1P4-201ENST00000566062 339 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.95□□□□□ -2.1
NPAS1Q99742 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
NPAS1Q99742 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
NPAS1Q99742 AC008555.8-201ENST00000623602 2168 ntBASIC1.95□□□□□ -2.1
NPAS1Q99742 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
NPAS1Q99742 Y_RNA.14-201ENST00000362415 103 ntBASIC1.94□□□□□ -2.1
NPAS1Q99742 Y_RNA.310-201ENST00000365063 113 ntBASIC1.94□□□□□ -2.1
NPAS1Q99742 MIR562-201ENST00000384894 95 ntBASIC1.94□□□□□ -2.1
NPAS1Q99742 MIR520G-201ENST00000385064 90 ntBASIC1.94□□□□□ -2.1
NPAS1Q99742 RNU2-40P-201ENST00000410833 196 ntBASIC1.94□□□□□ -2.1
NPAS1Q99742 COX6CP10-201ENST00000416832 224 ntBASIC1.94□□□□□ -2.1
NPAS1Q99742 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms