Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SNORA12.1-201ENST00000390873 148 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 SNORD78.2-201ENST00000391076 69 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 RNA5SP482-201ENST00000391269 118 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.57□□□□□ -2.16
SKA1Q96BD8 MIR1287-201ENST00000408492 90 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 ELOCP24-201ENST00000456370 334 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 U2.1-201ENST00000618978 145 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 MIR1302-1-201ENST00000637932 143 ntBASIC1.57□□□□□ -2.16
SKA1Q96BD8 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
SKA1Q96BD8 ZNF209P-201ENST00000593450 2304 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 RNU6-1283P-201ENST00000365314 105 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 RNU6-955P-201ENST00000410497 104 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.56□□□□□ -2.16
SKA1Q96BD8 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.56□□□□□ -2.16
SKA1Q96BD8 Y_RNA.673-201ENST00000516306 88 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 RNU6-911P-201ENST00000516523 104 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 RNA5SP168-201ENST00000516642 112 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 AL358944.1-201ENST00000528537 144 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 AL513534.2-201ENST00000603836 250 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 MTND4LP32-201ENST00000636111 270 ntBASIC1.56□□□□□ -2.16
SKA1Q96BD8 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
SKA1Q96BD8 SNORA1B-201ENST00000362535 133 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 RNU6-199P-201ENST00000362954 107 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 Y_RNA.124-201ENST00000363339 93 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 SNORA72.1-201ENST00000363485 129 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 RNU6-117P-201ENST00000365415 107 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 RNY4P36-201ENST00000391116 96 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.55□□□□□ -2.16
SKA1Q96BD8 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.55□□□□□ -2.16
SKA1Q96BD8 AC233266.1-201ENST00000454518 96 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 AC092991.1-201ENST00000477176 376 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 RNU6-1291P-201ENST00000516591 104 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 MIR4778-201ENST00000577635 80 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 AC242852.1-201ENST00000612151 96 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 AC244015.1-201ENST00000622301 99 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 AC106754.2-201ENST00000623006 233 ntBASIC1.55□□□□□ -2.16
SKA1Q96BD8 RNU6-961P-201ENST00000363893 105 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 SNORA25.9-201ENST00000365087 128 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 RNU6-424P-201ENST00000384367 105 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 RNU6-505P-201ENST00000384427 107 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 MTCO2P27-201ENST00000420740 428 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 MRPS18CP6-201ENST00000423587 223 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 SDAD1P3-201ENST00000427380 333 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 OR9P1P-201ENST00000496431 281 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 RNU6-277P-201ENST00000516272 106 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 RNU2-12P-201ENST00000517216 168 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 AC019288.1-201ENST00000557918 224 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 AC005176.2-201ENST00000596933 147 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 RBM11P1-201ENST00000604951 799 ntBASIC1.54□□□□□ -2.16
SKA1Q96BD8 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
SKA1Q96BD8 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
SKA1Q96BD8 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
SKA1Q96BD8 SNORA7.1-201ENST00000363750 139 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 SNORD115-30-201ENST00000364117 82 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 SNORA25.8-201ENST00000364831 128 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 Y_RNA.327-201ENST00000365201 102 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 MIR499A-201ENST00000384903 122 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 RNU5A-5P-201ENST00000411054 116 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 CALM2P4-201ENST00000430810 426 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 AL049830.1-201ENST00000468034 425 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.53□□□□□ -2.16
SKA1Q96BD8 RNU6-1096P-201ENST00000517089 102 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.53□□□□□ -2.16
SKA1Q96BD8 AL160236.1-201ENST00000556317 195 ntBASIC1.53□□□□□ -2.16
SKA1Q96BD8 Y_RNA.70-201ENST00000362886 110 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 RNY3P11-201ENST00000364153 102 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 RNU6-1040P-201ENST00000383974 107 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 AC093019.1-201ENST00000443135 252 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 RNU6-322P-201ENST00000516010 103 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 Y_RNA.718-201ENST00000517110 102 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 AC015720.1-201ENST00000565251 277 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 AL132765.2-201ENST00000610812 351 ntBASIC1.52□□□□□ -2.17
SKA1Q96BD8 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
SKA1Q96BD8 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.51□□□□□ -2.17
SKA1Q96BD8 Y_RNA.361-201ENST00000365515 120 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 MIR559-201ENST00000385188 96 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 U8.16-201ENST00000391279 133 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 RNU2-54P-201ENST00000410299 190 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.51□□□□□ -2.17
SKA1Q96BD8 HSPE1P13-201ENST00000451143 297 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 RNU7-12P-201ENST00000516030 62 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 RNU6-1012P-201ENST00000516606 109 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 RNU6-922P-201ENST00000516753 99 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 RNU6-699P-201ENST00000517081 110 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 AL645939.4-201ENST00000604495 135 ntBASIC1.51□□□□□ -2.17
SKA1Q96BD8 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
SKA1Q96BD8 Y_RNA.428-201ENST00000384078 102 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 SNORD116-29-201ENST00000384516 83 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 RNU6-136P-201ENST00000384663 107 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 AC023790.1-201ENST00000482174 347 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 Y_RNA.675-201ENST00000516389 149 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 RNU6-63P-201ENST00000516690 95 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 SNORD116.3-201ENST00000517176 78 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.5□□□□□ -2.17
SKA1Q96BD8 MIR4421-201ENST00000578133 69 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 VN1R91P-201ENST00000594377 169 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 GHRLOS.1-201ENST00000610995 70 ntBASIC1.5□□□□□ -2.17
SKA1Q96BD8 AL157834.3-201ENST00000615543 103 ntBASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 184.2 ms