Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 RNU6-743P-201ENST00000364151 106 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 Y_RNA.238-201ENST00000364441 102 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 U8.7-201ENST00000364940 136 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 SNORA25B-201ENST00000365507 128 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 RNU6-1323P-201ENST00000384025 107 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 RNU6-746P-201ENST00000384112 109 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 MIR196B-201ENST00000384852 84 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 MIR526A2-201ENST00000390198 65 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 MIR548M-201ENST00000408260 86 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 RNU6-394P-201ENST00000410735 107 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.74□□□□□ -1.97
ERCC4Q92889 MTND2P29-201ENST00000438595 412 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 RNU7-115P-201ENST00000516433 55 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 NDUFA5P6-201ENST00000542110 379 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 MIR4658-201ENST00000584344 65 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 5S_rRNA.13-201ENST00000622298 123 ntBASIC2.74□□□□□ -1.97
ERCC4Q92889 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
ERCC4Q92889 CENPCP1-201ENST00000533085 2578 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 Y_RNA.75-201ENST00000362927 97 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 RNU6-144P-201ENST00000383951 107 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 MIR518C-201ENST00000384822 101 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 SRIP3-201ENST00000413200 219 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 AC021269.2-201ENST00000532318 330 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 AL137100.2-201ENST00000555786 315 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 AP003357.1-201ENST00000604497 148 ntBASIC2.73□□□□□ -1.97
ERCC4Q92889 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
ERCC4Q92889 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
ERCC4Q92889 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ERCC4Q92889 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ERCC4Q92889 snoU2_19.4-201ENST00000364329 80 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 RNU6-407P-201ENST00000365280 104 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 SNORA8.3-201ENST00000384679 139 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 RNU6-1135P-201ENST00000411083 103 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 AC060773.1-201ENST00000421698 310 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.72□□□□□ -1.97
ERCC4Q92889 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.72□□□□□ -1.97
ERCC4Q92889 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.72□□□□□ -1.97
ERCC4Q92889 MIR6840-201ENST00000611937 71 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 MIR548AY-201ENST00000617669 107 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
ERCC4Q92889 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
ERCC4Q92889 AL136360.1-201ENST00000503377 1900 ntBASIC2.72□□□□□ -1.97
ERCC4Q92889 AL356292.1-201ENST00000283110 373 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 RNU6-1205P-201ENST00000363625 106 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 MIR27B-201ENST00000385129 97 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 RNU2-2P-201ENST00000410396 191 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 RNU5E-9P-201ENST00000411164 104 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 AL392103.1-201ENST00000447000 198 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.71□□□□□ -1.98
ERCC4Q92889 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.71□□□□□ -1.98
ERCC4Q92889 RN7SKP164-201ENST00000516138 266 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 RNU2-4P-201ENST00000606190 192 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 AC108706.1-201ENST00000611053 297 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 Y_RNA.802-201ENST00000614892 130 ntBASIC2.71□□□□□ -1.98
ERCC4Q92889 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.71□□□□□ -1.98
ERCC4Q92889 Y_RNA.23-201ENST00000362496 106 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 Y_RNA.99-201ENST00000363138 105 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 RNU1-22P-201ENST00000363334 158 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 RNU4-10P-201ENST00000364383 140 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 RNU6-312P-201ENST00000364629 107 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 Y_RNA.412-201ENST00000384001 104 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 SNORA6-201ENST00000384033 151 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 SNORA4.4-201ENST00000515921 135 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 AC027419.1-201ENST00000522976 328 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 AC015720.1-201ENST00000565251 277 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 AC127455.1-201ENST00000565496 145 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 AC005972.2-201ENST00000604690 348 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 AC021753.1-201ENST00000635724 168 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 AC068647.2-201ENST00000637380 353 ntBASIC2.7□□□□□ -1.98
ERCC4Q92889 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.7□□□□□ -1.98
ERCC4Q92889 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
ERCC4Q92889 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.69□□□□□ -1.98
ERCC4Q92889 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.69□□□□□ -1.98
ERCC4Q92889 Y_RNA.170-201ENST00000363746 110 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 Y_RNA.293-201ENST00000364908 93 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 RNU6-125P-201ENST00000384505 107 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 Y_RNA.572-201ENST00000384757 98 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 RNU4-61P-201ENST00000411243 107 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 AL135786.1-201ENST00000415892 214 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 AC010154.1-201ENST00000425857 269 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.69□□□□□ -1.98
ERCC4Q92889 AL162725.1-201ENST00000435405 301 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 AL353689.1-201ENST00000438895 199 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.69□□□□□ -1.98
ERCC4Q92889 AC117454.1-201ENST00000491120 168 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 AC097462.1-201ENST00000514125 324 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 RNU6-63P-201ENST00000516690 95 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 RNU7-116P-201ENST00000516940 62 ntBASIC2.69□□□□□ -1.98
ERCC4Q92889 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
ERCC4Q92889 RNU6-103P-201ENST00000363686 107 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 RNU1-96P-201ENST00000364163 162 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 RNU6-275P-201ENST00000364910 107 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 RNY1P5-201ENST00000383890 115 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 RNU1-52P-201ENST00000384190 164 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 Y_RNA.506-201ENST00000384494 102 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 SNORA36B-201ENST00000410438 131 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 RNA5SP511-201ENST00000410487 115 ntBASIC2.68□□□□□ -1.98
ERCC4Q92889 HSPE1P21-201ENST00000438283 308 ntBASIC2.68□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms