Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 AC005899.2-201ENST00000584353 90 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AC080078.3-201ENST00000605407 463 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 MIR6078-201ENST00000611069 100 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 7SK.8-201ENST00000612110 250 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AC025253.1-201ENST00000613623 543 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 7SK.11-201ENST00000615477 250 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AL157834.3-201ENST00000615543 103 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 AC004467.1-201ENST00000615678 330 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 7SK.13-201ENST00000622040 250 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 MTND4LP32-201ENST00000636111 270 ntBASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.93□□□□□ -2.26
CCDC54Q8NEL0 RNU6-1187P-201ENST00000364771 110 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 RNU6-926P-201ENST00000384075 107 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 SNORD116-13-201ENST00000384408 92 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 RNU6-1065P-201ENST00000384513 106 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 RNU6-950P-201ENST00000384651 107 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 Y_RNA.577-201ENST00000384794 101 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 MIR526A1-201ENST00000384897 85 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 MTCYBP4-201ENST00000401524 249 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 RNA5SP511-201ENST00000410487 115 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 MTND4P28-201ENST00000426217 387 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 RNU6-470P-201ENST00000515954 104 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 RNA5SP404-201ENST00000517118 132 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 AC011476.5-201ENST00000615594 130 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 AC027335.2-201ENST00000624030 375 ntBASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CCDC54Q8NEL0 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 SNORA17.3-201ENST00000391159 129 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AC114482.1-201ENST00000418010 247 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AC096644.2-201ENST00000429278 159 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 HSPE1P13-201ENST00000451143 297 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 RNU7-94P-201ENST00000459576 63 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AC048334.1-201ENST00000477975 159 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AL353997.5-201ENST00000618886 171 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 MIR8065-201ENST00000620577 100 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AC127459.3-201ENST00000624328 466 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 AC099654.14-201ENST00000638599 341 ntBASIC0.91□□□□□ -2.26
CCDC54Q8NEL0 RNU4-76P-201ENST00000364509 141 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.496-201ENST00000384444 101 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 SNORA69.1-201ENST00000390904 137 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 AL354751.2-201ENST00000415471 210 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RPL23AP50-201ENST00000434149 455 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 UBE2V1P7-201ENST00000446395 340 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RPS4XP11-201ENST00000446897 772 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RNU7-169P-201ENST00000459456 61 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RPS23P4-201ENST00000487908 423 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RPS26P48-201ENST00000491713 339 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 SNORD116-28-201ENST00000516123 91 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RNU6-559P-201ENST00000516151 98 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RNU6-1337P-201ENST00000516525 95 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RNU6-1012P-201ENST00000516606 109 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 AC015712.3-201ENST00000559380 164 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 AL513534.2-201ENST00000603836 250 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 AL022345.2-201ENST00000606307 135 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 AC240442.1-201ENST00000616055 283 ntBASIC0.9□□□□□ -2.27
CCDC54Q8NEL0 RNU6-199P-201ENST00000362954 107 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 RNU6-376P-201ENST00000384731 106 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 ELOCP24-201ENST00000456370 334 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 AC087343.1-201ENST00000477341 475 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 RNU6-1096P-201ENST00000517089 102 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 AL162424.1-201ENST00000602325 221 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 AC113139.1-201ENST00000605049 239 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 AL132765.2-201ENST00000610812 351 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 AL008636.1-201ENST00000625038 1018 ntBASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.89□□□□□ -2.27
CCDC54Q8NEL0 AL391516.1-201ENST00000554380 2449 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 Y_RNA.265-201ENST00000364677 108 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 RNU6-1080P-201ENST00000383982 107 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 SNORA25-201ENST00000384384 134 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 RNY3P4-201ENST00000384428 101 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AL031003.1-201ENST00000404229 172 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 RNA5SP475-201ENST00000410568 110 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 RNU6-1054P-201ENST00000411293 104 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AP1B1P2-201ENST00000416196 106 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AC098614.3-201ENST00000438957 440 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AC093852.1-201ENST00000503587 266 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 UBL5P1-201ENST00000507979 193 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 SNORA31.2-201ENST00000516019 134 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 RNU6-699P-201ENST00000517081 110 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AP002004.2-201ENST00000531656 154 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AC090049.2-201ENST00000550377 109 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AC012676.2-201ENST00000619258 186 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 AC104985.2-201ENST00000620598 500 ntBASIC0.88□□□□□ -2.27
CCDC54Q8NEL0 SNORD114-7-201ENST00000362520 77 ntBASIC0.87□□□□□ -2.27
CCDC54Q8NEL0 RNU6-20P-201ENST00000384106 107 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 123.2 ms