Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC067940.1-201ENST00000458411 300 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 AC083798.1-201ENST00000472671 131 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 MTND3P7-201ENST00000474435 343 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 AC108740.1-201ENST00000498629 225 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 AC114811.1-201ENST00000507207 168 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 RNU6-415P-201ENST00000516252 97 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 RNU6-107P-201ENST00000516643 102 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 AC023442.1-201ENST00000531247 422 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 MIR5696-201ENST00000578474 85 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 AC090625.1-201ENST00000357130 210 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 Y_RNA.295-201ENST00000364918 102 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 RNU6-128P-201ENST00000383976 107 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 RNU6-281P-201ENST00000384212 103 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 MIR452-201ENST00000385020 85 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 MIR520G-201ENST00000385064 90 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 MTCYBP4-201ENST00000401524 249 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 MIR1302-7-201ENST00000408841 72 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 AL392103.1-201ENST00000447000 198 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 AC083904.1-201ENST00000487828 231 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 MIR3684-201ENST00000579779 74 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 AC087752.4-201ENST00000605911 462 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.19□□□□□ -2.38
CCDC112Q8NEF3 SNORD113.3-201ENST00000364630 78 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 SNORA72.3-201ENST00000365074 132 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 SNORA75-201ENST00000384158 137 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 Y_RNA.476-201ENST00000384347 108 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 RNU6-95P-201ENST00000384697 107 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 MIR140-201ENST00000385282 100 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 AC046134.1-201ENST00000514454 666 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 RNU6-1278P-201ENST00000516130 107 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 Y_RNA.683-201ENST00000516508 93 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 RNU6-1096P-201ENST00000517089 102 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 AC134698.4-201ENST00000523451 826 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 MTND1P24-201ENST00000552175 861 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 MIR4764-201ENST00000580680 88 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 POLR3GP2-201ENST00000588366 668 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 AC127459.3-201ENST00000624328 466 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 AC099654.12-201ENST00000639868 649 ntBASIC0.18□□□□□ -2.38
CCDC112Q8NEF3 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 RNU6-648P-201ENST00000410190 107 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 RNU6-994P-201ENST00000410507 111 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 ELOCP21-201ENST00000412558 336 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 AC243428.1-201ENST00000421099 264 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 PCNPP5-201ENST00000452246 481 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 HMGN1P10-201ENST00000474557 553 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 RNU6-835P-201ENST00000516974 104 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 RNU6-89P-201ENST00000606519 100 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.17□□□□□ -2.38
CCDC112Q8NEF3 RNU6-654P-201ENST00000364373 107 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 AC117470.1-201ENST00000381974 330 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 MIR516B2-201ENST00000385190 85 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 RNU6-1304P-201ENST00000411374 106 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 AL590632.1-201ENST00000424289 371 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 RPS3AP17-201ENST00000472594 777 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 MIR4762-201ENST00000585261 75 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 AC073648.5-201ENST00000603502 305 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 AC104695.3-201ENST00000604052 296 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 U6.115-201ENST00000636045 103 ntBASIC0.16□□□□□ -2.38
CCDC112Q8NEF3 RNU6-369P-201ENST00000362515 102 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 SNORD68-201ENST00000363214 84 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 RNA5SP48-201ENST00000363969 126 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 U8.5-201ENST00000364528 136 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 Y_RNA.296-201ENST00000364930 108 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 RNU6-1327P-201ENST00000365302 105 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 RNU6-1264P-201ENST00000383891 107 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 RNU6-136P-201ENST00000384663 107 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 MIR517A-201ENST00000385001 87 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 RNU4-55P-201ENST00000410731 137 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 AC105313.1-201ENST00000509121 353 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 Y_RNA.681-201ENST00000516445 113 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 RNU7-43P-201ENST00000516554 64 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 AC005828.6-201ENST00000606610 232 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 AC097520.1-201ENST00000624435 385 ntBASIC0.15□□□□□ -2.39
CCDC112Q8NEF3 MIR1-1-201ENST00000362147 71 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 RNA5SP62-201ENST00000363457 110 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 RNU6-1322P-201ENST00000364309 107 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 Y_RNA.231-201ENST00000364358 102 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 Y_RNA.280-201ENST00000364765 112 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 Y_RNA.372-201ENST00000365599 102 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 SNORD14.1-201ENST00000365609 90 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 MIR136-201ENST00000385207 82 ntBASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.14□□□□□ -2.39
CCDC112Q8NEF3 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.14□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 131.6 ms