| HOOK3 | Q86VS8 | RNU6-1156P-201 | ENST00000410365 | 100 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU5A-5P-201 | ENST00000411054 | 116 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC006159.2-201 | ENST00000421965 | 692 nt | TSL 2 BASIC | 1.25 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AP000235.1-201 | ENST00000424017 | 479 nt | TSL 3 BASIC | 1.25 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | CALM2P4-201 | ENST00000430810 | 426 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | 5S_rRNA.13-201 | ENST00000622298 | 123 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | NPAT-201 | ENST00000278612 | 6117 nt | APPRIS P2 TSL 1 (best) BASIC | 1.25 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | Y_RNA.124-201 | ENST00000363339 | 93 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | MIR520G-201 | ENST00000385064 | 90 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | MIR653-201 | ENST00000385279 | 96 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | U8.16-201 | ENST00000391279 | 133 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | Y_RNA.592-201 | ENST00000410274 | 109 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AL589935.1-209 | ENST00000432050 | 418 nt | TSL 5 BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RPS29P28-201 | ENST00000446439 | 141 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AL133373.1-201 | ENST00000497098 | 94 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC022493.2-201 | ENST00000506122 | 481 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU6-120P-201 | ENST00000516077 | 103 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU6-922P-201 | ENST00000516753 | 99 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNY1P10-201 | ENST00000363268 | 113 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | Y_RNA.361-201 | ENST00000365515 | 120 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AL591704.2-201 | ENST00000421658 | 181 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | LINC02238-202 | ENST00000436262 | 320 nt | TSL 3 BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | OR2A41P-201 | ENST00000473586 | 105 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC078980.1-201 | ENST00000485384 | 262 nt | TSL 2 BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU6-408P-201 | ENST00000515910 | 100 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU6-1291P-201 | ENST00000516591 | 104 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU7-4P-201 | ENST00000516961 | 62 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AL358944.1-201 | ENST00000528537 | 144 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | NKAIN2-205 | ENST00000546092 | 148 nt | TSL 5 BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC138625.2-201 | ENST00000563968 | 551 nt | TSL 3 BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | MIR4295-201 | ENST00000585286 | 85 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | LUZP6-201 | ENST00000589735 | 177 nt | APPRIS P1 BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC091895.1-201 | ENST00000624494 | 256 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | GNPDA2-204 | ENST00000509756 | 5382 nt | APPRIS ALT1 TSL 1 (best) BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC005592.1-201 | ENST00000566527 | 1640 nt | BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU6-890P-201 | ENST00000384121 | 107 nt | BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | Y_RNA.474-201 | ENST00000384341 | 102 nt | BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC069079.1-201 | ENST00000419889 | 400 nt | TSL 3 BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | LINC01870-201 | ENST00000427042 | 390 nt | TSL 3 BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC092813.2-201 | ENST00000434540 | 399 nt | TSL 3 BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | DYNLT3P2-201 | ENST00000442517 | 295 nt | BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | RNU2-12P-201 | ENST00000517216 | 168 nt | BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC090049.2-201 | ENST00000550377 | 109 nt | BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | AC084882.1-201 | ENST00000561254 | 555 nt | TSL 4 BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | GHRLOS.1-201 | ENST00000610995 | 70 nt | BASIC | 1.22 | □□□□□ -2.21 | | |
| HOOK3 | Q86VS8 | MGAT4C-209 | ENST00000611864 | 25116 nt | APPRIS P1 TSL 5 BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-321P-201 | ENST00000410912 | 106 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC098614.3-201 | ENST00000438957 | 440 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC005840.1-201 | ENST00000498412 | 377 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA20.3-201 | ENST00000516880 | 132 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-1096P-201 | ENST00000517089 | 102 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC144568.1-201 | ENST00000520139 | 137 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC113139.1-201 | ENST00000605049 | 239 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC122108.2-201 | ENST00000611946 | 526 nt | BASIC | 1.21 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-961P-201 | ENST00000363893 | 105 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORD115-30-201 | ENST00000364117 | 82 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA70.7-201 | ENST00000384159 | 133 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA25-201 | ENST00000384384 | 134 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNY3P4-201 | ENST00000384428 | 101 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORD41-201 | ENST00000386967 | 70 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | FCF1P4-201 | ENST00000448326 | 183 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL049830.1-201 | ENST00000468034 | 425 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC105758.1-201 | ENST00000506038 | 399 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-470P-201 | ENST00000515954 | 104 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-322P-201 | ENST00000516010 | 103 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-917P-201 | ENST00000516294 | 104 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC023442.1-201 | ENST00000531247 | 422 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL022345.2-201 | ENST00000606307 | 135 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC025253.1-201 | ENST00000613623 | 543 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC004467.1-201 | ENST00000615678 | 330 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC027335.2-201 | ENST00000624030 | 375 nt | BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | MT-ND4-201 | ENST00000361381 | 1378 nt | APPRIS P1 BASIC | 1.2 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | LRRD1-203 | ENST00000430130 | 2661 nt | APPRIS P1 TSL 5 BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | MIRLET7C-201 | ENST00000362160 | 84 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA2.2-201 | ENST00000365473 | 135 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | TRAJ3-201 | ENST00000390534 | 62 nt | APPRIS P1 BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AL451046.2-201 | ENST00000403074 | 277 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC078851.1-201 | ENST00000415918 | 298 nt | TSL 3 BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | HSPE1P13-201 | ENST00000451143 | 297 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC233266.1-201 | ENST00000454518 | 96 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | Y_RNA.653-201 | ENST00000459091 | 95 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | LINC02491-201 | ENST00000504710 | 403 nt | TSL 2 BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU7-12P-201 | ENST00000516030 | 62 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | SNORA70.12-201 | ENST00000516084 | 153 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-559P-201 | ENST00000516151 | 98 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU7-40P-201 | ENST00000516397 | 64 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-63P-201 | ENST00000516690 | 95 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNA5SP404-201 | ENST00000517118 | 132 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC100807.1-201 | ENST00000517640 | 552 nt | TSL 5 BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | HSPE1P19-201 | ENST00000603327 | 295 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | BX284668.6-201 | ENST00000606899 | 438 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC242852.1-201 | ENST00000612151 | 96 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC133104.2-201 | ENST00000615272 | 193 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC244015.1-201 | ENST00000622301 | 99 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC099654.14-201 | ENST00000638599 | 341 nt | BASIC | 1.19 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | Y_RNA.164-201 | ENST00000363709 | 102 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-926P-201 | ENST00000384075 | 107 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RNU6-1304P-201 | ENST00000411374 | 106 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | AC138393.2-201 | ENST00000414742 | 246 nt | BASIC | 1.18 | □□□□□ -2.22 | | |
| HOOK3 | Q86VS8 | RBMX2P4-201 | ENST00000441256 | 376 nt | BASIC | 1.18 | □□□□□ -2.22 | | |