Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 uc_338.34-201ENST00000617467 174 ntBASIC0.03□□□□□ -2.4
CCDC88AQ3V6T2 SNORD95.1-201ENST00000364099 68 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 BX295541.1-201ENST00000417774 250 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 MTCYBP8-201ENST00000422855 651 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 MTCO2P16-201ENST00000436962 677 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 ELOCP24-201ENST00000456370 334 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU7-56P-201ENST00000458744 62 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU7-63P-201ENST00000459054 62 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 RNU4-49P-201ENST00000516080 140 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC069113.3-201ENST00000521019 150 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 MIR4804-201ENST00000581683 73 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 MIR6755-201ENST00000619993 66 ntBASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.03□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.168-201ENST00000363740 102 ntBASIC0.02□□□□□ -2.41
CCDC88AQ3V6T2 MIR520F-201ENST00000384824 87 ntBASIC0.02□□□□□ -2.41
CCDC88AQ3V6T2 MIR153-2-201ENST00000385225 87 ntBASIC0.02□□□□□ -2.41
CCDC88AQ3V6T2 RNU7-187P-201ENST00000458985 68 ntBASIC0.02□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-261P-201ENST00000459506 102 ntBASIC0.02□□□□□ -2.41
CCDC88AQ3V6T2 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC0.02□□□□□ -2.41
CCDC88AQ3V6T2 AL158063.1-201ENST00000615349 536 ntBASIC0.02□□□□□ -2.41
CCDC88AQ3V6T2 MIR1-1-201ENST00000362147 71 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 SNORD68-201ENST00000363214 84 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-281P-201ENST00000384212 103 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.537-201ENST00000384626 109 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-925P-201ENST00000384629 104 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MT-TH-201ENST00000387441 69 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 ELOCP21-201ENST00000412558 336 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 snoU13.19-201ENST00000459148 104 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC010598.1-201ENST00000510378 103 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MTND1P22-201ENST00000510572 951 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU7-41P-201ENST00000515917 61 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-977P-201ENST00000516411 103 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR4264-201ENST00000583520 66 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-89P-201ENST00000606519 100 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 Pinc.1-201ENST00000616452 154 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC007494.3-201ENST00000624660 743 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.267-201ENST00000364679 109 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-407P-201ENST00000365280 104 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-117P-201ENST00000365415 107 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.361-201ENST00000365515 120 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1297P-201ENST00000384415 104 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.517-201ENST00000384551 106 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR452-201ENST00000385020 85 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1304P-201ENST00000411374 106 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 DAP3P1-201ENST00000441522 278 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU7-180P-201ENST00000459240 63 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MTCO2P30-201ENST00000503662 364 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR4778-201ENST00000577635 80 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR4493-201ENST00000584016 73 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC087683.2-201ENST00000611384 326 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC005592.1-201ENST00000566527 1640 ntBASIC0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR520H-201ENST00000385126 88 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 MTCO2P19-201ENST00000427513 598 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 AC073415.1-201ENST00000449240 153 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1208P-201ENST00000459588 107 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 AC116353.2-201ENST00000505332 712 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 RNU2-56P-201ENST00000516826 190 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 FRG2DP-202ENST00000566967 323 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 AC007684.1-201ENST00000609671 477 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 AC078938.1-201ENST00000620993 318 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 AC099654.12-201ENST00000639868 649 ntBASIC0□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.184-201ENST00000363884 108 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.378-201ENST00000365652 113 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-1145P-201ENST00000384246 107 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.481-201ENST00000384373 102 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR517A-201ENST00000385001 87 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 PDCL2P1-201ENST00000419302 352 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 MTND3P23-201ENST00000431980 347 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 ZNF736P12Y-201ENST00000443152 1243 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 SNRPGP12-201ENST00000449481 213 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR3684-201ENST00000579779 74 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR4290-201ENST00000583807 95 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 AF250324.2-201ENST00000608299 610 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 SNORD113-7-201ENST00000363762 77 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-128P-201ENST00000383976 107 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.415-201ENST00000384012 112 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC018865.2-201ENST00000423631 129 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC023827.1-201ENST00000569247 97 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 MIR548AR-201ENST00000582191 57 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC234772.3-201ENST00000602277 528 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 AC022306.3-201ENST00000619930 550 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-0.01□□□□□ -2.41
CCDC88AQ3V6T2 SNORA42.1-201ENST00000363515 137 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 Y_RNA.319-201ENST00000365138 92 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 SNORD38C-201ENST00000384381 69 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-994P-201ENST00000410507 111 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 RNU6-248P-201ENST00000410720 107 ntBASIC-0.02□□□□□ -2.41
CCDC88AQ3V6T2 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC-0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 230.7 ms