Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.21□□□□□ -2.44
FOXA3P55318 SNORA32.1-201ENST00000364514 115 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 RNU6-580P-201ENST00000365159 107 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 RNU6-929P-201ENST00000384429 107 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 RNU6-297P-201ENST00000384636 107 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 Y_RNA.560-201ENST00000384689 102 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 SNORD100-201ENST00000408573 76 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC-0.21□□□□□ -2.44
FOXA3P55318 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-0.21□□□□□ -2.44
FOXA3P55318 AC073464.1-201ENST00000429823 534 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 MTCO2P16-201ENST00000436962 677 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 AL353572.1-201ENST00000442490 417 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 AC069271.1-201ENST00000445577 156 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 AC079354.2-201ENST00000453523 154 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 MTCO3P38-201ENST00000468910 766 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 RPL30P10-201ENST00000488148 337 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 MTCO1P29-201ENST00000496868 288 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 AC093303.1-201ENST00000514549 295 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 RNU7-129P-201ENST00000516128 62 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 SNORA40.12-201ENST00000516329 111 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC-0.21□□□□□ -2.44
FOXA3P55318 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC-0.21□□□□□ -2.44
FOXA3P55318 MIR1273G-201ENST00000577677 100 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 AC011712.1-201ENST00000588959 234 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 AC092747.3-201ENST00000603769 301 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 AC008608.1-201ENST00000603910 127 ntBASIC-0.21□□□□□ -2.44
FOXA3P55318 SNORA36.1-201ENST00000363424 132 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 SNORD114-26-201ENST00000363543 72 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 SNORD115-32-201ENST00000364079 82 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 U8.5-201ENST00000364528 136 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 Y_RNA.269-201ENST00000364685 89 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 RNU6-996P-201ENST00000365438 107 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 RNU6V-201ENST00000384105 107 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 Y_RNA.508-201ENST00000384502 114 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 RNU6-127P-201ENST00000390897 107 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 MIR1197-201ENST00000408818 88 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 AL354751.2-201ENST00000415471 210 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.22□□□□□ -2.44
FOXA3P55318 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.22□□□□□ -2.44
FOXA3P55318 MTCO2P11-201ENST00000431069 680 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 SUMO1P2-201ENST00000452524 304 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 AL356010.1-201ENST00000456364 102 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 RNU6-1332P-201ENST00000516666 104 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 MIR8087-201ENST00000612745 78 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 AC022306.3-201ENST00000619930 550 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 MIR6755-201ENST00000619993 66 ntBASIC-0.22□□□□□ -2.44
FOXA3P55318 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC-0.22□□□□□ -2.44
FOXA3P55318 RNU6-1120P-201ENST00000362988 108 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 RNA5SP117-201ENST00000365294 118 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 RNU6-214P-201ENST00000384130 107 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 RNU6-790P-201ENST00000384479 105 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 MIR938-201ENST00000401216 83 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AC073415.1-201ENST00000449240 153 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 RNU7-63P-201ENST00000459054 62 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 RPL23AP54-201ENST00000495129 419 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-0.23□□□□□ -2.45
FOXA3P55318 RN7SKP287-201ENST00000516546 266 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AC141557.1-201ENST00000540982 400 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AC133485.4-201ENST00000561835 220 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AC090897.1-201ENST00000580909 226 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 MIR4762-201ENST00000585261 75 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AC011458.1-201ENST00000604034 617 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AP000753.3-201ENST00000604083 169 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 Z94722.1-201ENST00000604328 474 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AL354950.2-201ENST00000617939 290 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AC072046.2-201ENST00000618366 268 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 AC103705.1-201ENST00000619013 241 ntBASIC-0.23□□□□□ -2.45
FOXA3P55318 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-0.23□□□□□ -2.45
FOXA3P55318 RNU6-1214P-201ENST00000363650 109 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 Y_RNA.258-201ENST00000364613 105 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 SNORD50B-201ENST00000364995 70 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 RNU6-302P-201ENST00000365249 107 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 Y_RNA.378-201ENST00000365652 113 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 Y_RNA.381-201ENST00000365666 102 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 RNU6-514P-201ENST00000384208 107 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 MIR522-201ENST00000385071 87 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 MTATP6P18-201ENST00000417994 673 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 Z99497.1-201ENST00000421282 135 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 RNU7-102P-201ENST00000458948 62 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC-0.24□□□□□ -2.45
FOXA3P55318 RNU6-311P-201ENST00000516224 102 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 Y_RNA.683-201ENST00000516508 93 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 AL118558.2-201ENST00000556294 238 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 PIGPP4-201ENST00000584447 307 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 MIR4424-201ENST00000585257 86 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 AL133215.3-201ENST00000609801 448 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 AC004223.4-201ENST00000612426 332 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 U6.115-201ENST00000636045 103 ntBASIC-0.24□□□□□ -2.45
FOXA3P55318 MIR377-201ENST00000362145 69 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 Y_RNA.151-201ENST00000363566 112 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU5F-3P-201ENST00000363767 117 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 snoU2-30.1-201ENST00000365012 70 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 Y_RNA.368-201ENST00000365547 113 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-364P-201ENST00000384387 107 ntBASIC-0.25□□□□□ -2.45
FOXA3P55318 RNU6-125P-201ENST00000384505 107 ntBASIC-0.25□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 112.6 ms