Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MTCYBP4-201ENST00000401524 249 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 AC006461.1-201ENST00000412637 326 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 AC093534.1-201ENST00000504977 132 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 AC022493.2-201ENST00000506122 481 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 ACA64.5-201ENST00000516207 127 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 RNU6-1291P-201ENST00000516591 104 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 RNU7-28P-201ENST00000516759 62 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.59□□□□□ -2.31
FOXA1P55317 AL121579.1-201ENST00000555129 305 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 MIR4790-201ENST00000577799 79 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 MIR5701-3-201ENST00000578890 82 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 MIR5701-1-201ENST00000585138 82 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 AC011712.1-201ENST00000588959 234 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 MIR5701-2-201ENST00000615634 82 ntBASIC0.59□□□□□ -2.31
FOXA1P55317 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
FOXA1P55317 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.58□□□□□ -2.32
FOXA1P55317 MIRLET7C-201ENST00000362160 84 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 RNA5SP361-201ENST00000362686 118 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 Y_RNA.124-201ENST00000363339 93 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 Y_RNA.205-201ENST00000364128 113 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 Y_RNA.295-201ENST00000364918 102 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 Y_RNA.301-201ENST00000364990 103 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 Y_RNA.436-201ENST00000384097 102 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 Y_RNA.450-201ENST00000384198 113 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 RNU6-1145P-201ENST00000384246 107 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 Y_RNA.473-201ENST00000384333 102 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 MIR562-201ENST00000384894 95 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
FOXA1P55317 MIR190B-201ENST00000401119 79 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 RNA5SP118-201ENST00000410385 109 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AC114482.1-201ENST00000418010 247 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AC016907.1-201ENST00000419483 435 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AL606490.4-201ENST00000423117 127 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AC104332.1-201ENST00000440471 797 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA1P55317 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA1P55317 AP002004.2-201ENST00000531656 154 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA1P55317 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.58□□□□□ -2.32
FOXA1P55317 MIR3684-201ENST00000579779 74 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 RN7SL793P-201ENST00000583259 296 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AL117336.2-201ENST00000602435 335 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AL357312.1-201ENST00000603879 298 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AC012557.2-201ENST00000605919 418 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 AC005014.2-201ENST00000607795 599 ntBASIC0.58□□□□□ -2.32
FOXA1P55317 RNU6-874P-201ENST00000362390 105 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 RNA5SP325-201ENST00000363756 130 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 SNORD114-24-201ENST00000365029 72 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 RNU4-12P-201ENST00000365233 139 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 MIR216A-201ENST00000385063 110 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 RNA5SP482-201ENST00000391269 118 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AL139396.1-201ENST00000421137 167 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC0.57□□□□□ -2.32
FOXA1P55317 AL137792.2-201ENST00000443484 235 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 RNU7-87P-201ENST00000459343 62 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 RPS26P48-201ENST00000491713 339 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 PDCD5P2-201ENST00000507570 312 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.57□□□□□ -2.32
FOXA1P55317 RNU4-49P-201ENST00000516080 140 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 Y_RNA.682-201ENST00000516457 100 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 RNU6-1116P-201ENST00000517269 99 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AP002001.1-203ENST00000534002 267 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AC004817.2-201ENST00000561794 651 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AC133485.1-201ENST00000567176 124 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AC138907.6-201ENST00000568401 126 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AC005730.3-201ENST00000583067 366 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AL590095.2-201ENST00000604136 117 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AC018462.2-201ENST00000605375 395 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 AC104260.1-201ENST00000616660 539 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.57□□□□□ -2.32
FOXA1P55317 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.57□□□□□ -2.32
FOXA1P55317 RNU6-879P-201ENST00000364328 108 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 Y_RNA.364-201ENST00000365532 101 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 RNU6-969P-201ENST00000383900 105 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 SNORA80D-201ENST00000384488 135 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 RNY1P4-201ENST00000384595 115 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 Y_RNA.557-201ENST00000384680 107 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 MIR92A1-201ENST00000385233 78 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 RNU6-700P-201ENST00000391043 107 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 RNU5A-5P-201ENST00000411054 116 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.56□□□□□ -2.32
FOXA1P55317 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.56□□□□□ -2.32
FOXA1P55317 PCNPP5-201ENST00000452246 481 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 U8.22-201ENST00000459141 133 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 RPS29P25-201ENST00000481709 171 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 MTND5P5-201ENST00000503764 376 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 AC026782.1-201ENST00000512952 449 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 AC074133.1-201ENST00000515696 183 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 RNU6-1278P-201ENST00000516130 107 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 AC105029.1-201ENST00000520250 669 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 AC018448.1-201ENST00000552843 316 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 AC080013.6-201ENST00000606185 215 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 AC093913.1-201ENST00000614178 329 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 MIR6513-201ENST00000621188 64 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.56□□□□□ -2.32
FOXA1P55317 U6.115-201ENST00000636045 103 ntBASIC0.56□□□□□ -2.32
FOXA1P55317 RNU6-454P-201ENST00000364292 107 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 RNU4-41P-201ENST00000364426 143 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 RNU6-117P-201ENST00000365415 107 ntBASIC0.55□□□□□ -2.32
FOXA1P55317 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms