Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 NDUFA4P2-201ENST00000489989 244 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC-0.27□□□□□ -2.45
NUP98P52948 RNU6-445P-201ENST00000516949 107 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 MIR548AR-201ENST00000582191 57 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 AC009248.2-201ENST00000619826 254 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC-0.28□□□□□ -2.45
NUP98P52948 RNU6-456P-201ENST00000384493 107 ntBASIC-0.28□□□□□ -2.45
NUP98P52948 MIR892B-201ENST00000401279 77 ntBASIC-0.28□□□□□ -2.45
NUP98P52948 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.28□□□□□ -2.45
NUP98P52948 AC005178.1-201ENST00000508392 440 ntBASIC-0.28□□□□□ -2.45
NUP98P52948 RNU6-320P-201ENST00000516511 106 ntBASIC-0.28□□□□□ -2.45
NUP98P52948 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC-0.28□□□□□ -2.45
NUP98P52948 AC104576.1-201ENST00000524225 88 ntBASIC-0.28□□□□□ -2.45
NUP98P52948 MIR4762-201ENST00000585261 75 ntBASIC-0.28□□□□□ -2.45
NUP98P52948 AL391834.2-201ENST00000609982 546 ntBASIC-0.28□□□□□ -2.45
NUP98P52948 RNU6-500P-201ENST00000362349 107 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 RNA5SP48-201ENST00000363969 126 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 RNU6-82P-201ENST00000363970 107 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 RNU6-606P-201ENST00000384721 111 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 MTND4P32-201ENST00000437189 1237 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 RNA5SP268-201ENST00000516828 124 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 AL137161.1-201ENST00000532231 390 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 AGGF1P4-201ENST00000568249 801 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 AC245014.2-201ENST00000603689 287 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 AC246785.4-201ENST00000605374 287 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 Y_RNA.184-201ENST00000363884 108 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 RNU6-125P-201ENST00000384505 107 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-0.29□□□□□ -2.46
NUP98P52948 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.29□□□□□ -2.46
NUP98P52948 AC090897.1-201ENST00000580909 226 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 MIR4743-201ENST00000584576 69 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 AL158050.2-201ENST00000605336 568 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 MIR4251-201ENST00000635819 61 ntBASIC-0.29□□□□□ -2.46
NUP98P52948 SNORD14.1-201ENST00000365609 90 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 MIR145-201ENST00000384967 88 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 MIR487A-201ENST00000385009 80 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 RNA5SP95-201ENST00000410319 137 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 SNORD42A-201ENST00000459584 64 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.3□□□□□ -2.46
NUP98P52948 SNORA40.12-201ENST00000516329 111 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 MIR548AO-201ENST00000579992 96 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 AC010608.3-201ENST00000625048 527 ntBASIC-0.3□□□□□ -2.46
NUP98P52948 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.3□□□□□ -2.46
NUP98P52948 SNORA72.1-201ENST00000363485 129 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 SNORD49B-201ENST00000365172 72 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 Y_RNA.415-201ENST00000384012 112 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 MIR635-201ENST00000384830 98 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 MIR593-201ENST00000384856 100 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 MIR938-201ENST00000401216 83 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 RNU5A-5P-201ENST00000411054 116 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC-0.31□□□□□ -2.46
NUP98P52948 AP003461.1-201ENST00000528866 78 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 AL158209.2-201ENST00000619266 216 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.31□□□□□ -2.46
NUP98P52948 SNORA8.2-201ENST00000384372 139 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-0.31□□□□□ -2.46
NUP98P52948 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.31□□□□□ -2.46
NUP98P52948 RNU6-848P-201ENST00000515948 107 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 RNU6-617P-201ENST00000516147 107 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 RNU6-473P-201ENST00000516164 107 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 MTND2P38-201ENST00000522536 667 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 AP000753.3-201ENST00000604083 169 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 AC087683.2-201ENST00000611384 326 ntBASIC-0.31□□□□□ -2.46
NUP98P52948 SNORD114-5-201ENST00000362928 70 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 MTCO2P33-201ENST00000402100 465 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 SNORD100-201ENST00000408573 76 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 RNA5SP451-201ENST00000410588 110 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 SNORD83.1-201ENST00000411362 77 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 AL353572.1-201ENST00000442490 417 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.32□□□□□ -2.46
NUP98P52948 RNA5SP94-201ENST00000516917 108 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 UBL5P4-201ENST00000562584 236 ntBASIC-0.32□□□□□ -2.46
NUP98P52948 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-0.32□□□□□ -2.46
NUP98P52948 SNORA27.1-201ENST00000362604 124 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 RNU6-674P-201ENST00000363831 107 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 RNU6-1329P-201ENST00000365664 107 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 MIR153-2-201ENST00000385225 87 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-0.33□□□□□ -2.46
NUP98P52948 CPDP1-201ENST00000579660 283 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 MIR4264-201ENST00000583520 66 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 AL136370.1-201ENST00000608166 691 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 AL133215.3-201ENST00000609801 448 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 HULC.1-201ENST00000612720 240 ntBASIC-0.33□□□□□ -2.46
NUP98P52948 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.33□□□□□ -2.46
NUP98P52948 RNA5SP128-201ENST00000365305 116 ntBASIC-0.34□□□□□ -2.46
NUP98P52948 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.34□□□□□ -2.46
NUP98P52948 RNU6-214P-201ENST00000384130 107 ntBASIC-0.34□□□□□ -2.46
NUP98P52948 SNORA20B-201ENST00000384220 132 ntBASIC-0.34□□□□□ -2.46
NUP98P52948 MIR15B-201ENST00000385045 98 ntBASIC-0.34□□□□□ -2.46
NUP98P52948 MTND4LP11-201ENST00000422184 280 ntBASIC-0.34□□□□□ -2.46
NUP98P52948 AL590632.1-201ENST00000424289 371 ntBASIC-0.34□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms