Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 SNORA48.1-201ENST00000390879 135 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 RNA5SP323-201ENST00000391094 133 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AL117342.1-201ENST00000404861 406 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AL355796.1-201ENST00000406706 323 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AC113618.1-201ENST00000416747 285 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXC9P31274 RPS27P22-201ENST00000478056 241 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 RNU6-155P-201ENST00000516347 100 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 RNU6-1046P-201ENST00000516538 107 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.88□□□□□ -2.11
HOXC9P31274 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.88□□□□□ -2.11
HOXC9P31274 AC008749.1-201ENST00000597650 306 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AL096840.1-201ENST00000603287 93 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AC069114.2-201ENST00000604699 304 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 AL353149.1-201ENST00000610667 244 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 U1.36-201ENST00000620684 176 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 U6.115-201ENST00000636045 103 ntBASIC1.88□□□□□ -2.11
HOXC9P31274 RNU6-324P-201ENST00000363957 106 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 SNORA20B-201ENST00000384220 132 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 MIR320A-201ENST00000385302 82 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 AL590004.1-201ENST00000405321 300 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 MIR1252-201ENST00000408861 65 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 RNU6-1186P-201ENST00000410429 97 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 AL158823.1-201ENST00000418441 478 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 RNU1-123P-201ENST00000458950 160 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 AC010598.1-201ENST00000510378 103 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 RNU6-966P-201ENST00000516479 104 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 RNU7-110P-201ENST00000516891 62 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 AC113195.1-201ENST00000579952 141 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 AC022432.1-201ENST00000595739 310 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 AC006380.1-201ENST00000603598 186 ntBASIC1.87□□□□□ -2.11
HOXC9P31274 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HOXC9P31274 SNORA63.7-201ENST00000365579 123 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.508-201ENST00000384502 114 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HOXC9P31274 CST2P1-201ENST00000425770 87 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 HMGN1P7-201ENST00000491722 313 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 RNU6-764P-201ENST00000516396 105 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.713-201ENST00000517013 96 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 RNU2-12P-201ENST00000517216 168 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 AC131281.1-201ENST00000522984 164 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 AL137100.2-201ENST00000555786 315 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 MIR4299-201ENST00000577899 72 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 AC006504.6-201ENST00000590142 199 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.812-201ENST00000610788 101 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.784-201ENST00000613803 101 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 AL773524.1-201ENST00000614065 229 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.787-201ENST00000616522 101 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.780-201ENST00000617336 101 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.801-201ENST00000619005 101 ntBASIC1.86□□□□□ -2.11
HOXC9P31274 Y_RNA.124-201ENST00000363339 93 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 Y_RNA.210-201ENST00000364161 110 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 Y_RNA.230-201ENST00000364348 109 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 Y_RNA.355-201ENST00000365462 98 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.85□□□□□ -2.11
HOXC9P31274 Y_RNA.446-201ENST00000384178 104 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 SNORA8-201ENST00000384574 139 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 Y_RNA.570-201ENST00000384750 101 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 RNU4-30P-201ENST00000410245 143 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 RNU2-54P-201ENST00000410299 190 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.85□□□□□ -2.11
HOXC9P31274 AC010409.1-201ENST00000487382 476 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 SNORA40.15-201ENST00000516884 107 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 RNU6-897P-201ENST00000517135 105 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 AL442663.2-201ENST00000554385 511 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 MIR4438-201ENST00000585271 93 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.85□□□□□ -2.11
HOXC9P31274 AC011373.1-201ENST00000607270 237 ntBASIC1.85□□□□□ -2.11
HOXC9P31274 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXC9P31274 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HOXC9P31274 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
HOXC9P31274 Y_RNA.153-201ENST00000363615 91 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 RNA5SP363-201ENST00000365072 115 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 Y_RNA.331-201ENST00000365267 102 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 RNU6-21P-201ENST00000384710 107 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 SNRPGP13-201ENST00000442212 177 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 AC004223.1-201ENST00000479840 271 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 RNA5SP102-201ENST00000516865 106 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXC9P31274 AC084364.2-201ENST00000546924 395 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 MIR6504-201ENST00000613520 61 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 MIR376A1-201ENST00000616574 68 ntBASIC1.84□□□□□ -2.11
HOXC9P31274 Y_RNA.116-201ENST00000363292 103 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 SNORD115-30-201ENST00000364117 82 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 Y_RNA.380-201ENST00000365663 111 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 Y_RNA.422-201ENST00000384054 114 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 MIR606-201ENST00000384851 96 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 RNA5SP212-201ENST00000391223 107 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 AL031003.1-201ENST00000404229 172 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 RNU6-985P-201ENST00000410182 104 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 RNU2-7P-201ENST00000410794 178 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 RNU5A-5P-201ENST00000411054 116 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 MRPS10P1-201ENST00000448483 130 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 RNA5SP20-201ENST00000515976 84 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 RNY3P15-201ENST00000516297 97 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 RNU1-142P-201ENST00000516682 145 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 SUB1P4-201ENST00000566062 339 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 AC136932.1-201ENST00000574771 208 ntBASIC1.83□□□□□ -2.12
HOXC9P31274 MIR3684-201ENST00000579779 74 ntBASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms