Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MRPS10P1-201ENST00000448483 130 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 CHEK2P4-201ENST00000450340 246 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 SUMO1P2-201ENST00000452524 304 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 RPL30P7-201ENST00000479312 323 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 AC027419.1-201ENST00000522976 328 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 AC023157.2-201ENST00000540596 141 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 AC022217.4-201ENST00000604389 163 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 AL078604.3-201ENST00000615580 211 ntBASIC1.31□□□□□ -2.2
PTPN4P29074 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.31□□□□□ -2.2
PTPN4P29074 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
PTPN4P29074 Y_RNA.146-201ENST00000363549 102 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 RNU6-939P-201ENST00000384634 107 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 MIR194-1-201ENST00000384892 85 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 MT-TD-201ENST00000387419 68 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 RPL21P1-201ENST00000399532 476 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 SNX2P2-201ENST00000424553 323 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 AC096644.2-201ENST00000429278 159 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 RPS27P22-201ENST00000478056 241 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 AC010469.2-201ENST00000496412 480 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.3□□□□□ -2.2
PTPN4P29074 RNU6-911P-201ENST00000516523 104 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 AC019176.1-201ENST00000518519 225 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 MIR4795-201ENST00000584182 89 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 U2.1-201ENST00000618978 145 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 AC091925.1-201ENST00000623204 462 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.3□□□□□ -2.2
PTPN4P29074 AC095038.3-201ENST00000634439 195 ntBASIC1.3□□□□□ -2.2
PTPN4P29074 RNU4-79P-201ENST00000362764 141 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 RNU6-961P-201ENST00000363893 105 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 RNU6-203P-201ENST00000384038 104 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 RNU6-926P-201ENST00000384075 107 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 Y_RNA.428-201ENST00000384078 102 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 Y_RNA.496-201ENST00000384444 101 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 MRPL42P3-201ENST00000401492 326 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 MIR1276-201ENST00000408707 83 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 RNA5SP475-201ENST00000410568 110 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 RPS27P16-201ENST00000425758 201 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.29□□□□□ -2.2
PTPN4P29074 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.29□□□□□ -2.2
PTPN4P29074 HMGN1P7-201ENST00000491722 313 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 RNU6-408P-201ENST00000515910 100 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 RN7SKP179-201ENST00000516126 217 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.29□□□□□ -2.2
PTPN4P29074 AL117336.2-201ENST00000602435 335 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 AC005828.6-201ENST00000606610 232 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 SNORA28-201ENST00000606769 126 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 AC040896.1-201ENST00000613819 479 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 U6.115-201ENST00000636045 103 ntBASIC1.29□□□□□ -2.2
PTPN4P29074 SNORA27.1-201ENST00000362604 124 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 RNU1-22P-201ENST00000363334 158 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 Y_RNA.315-201ENST00000365117 102 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 MIR513A1-201ENST00000385138 129 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 MIR628-201ENST00000385229 95 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 SNORD78.2-201ENST00000391076 69 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 AL034345.1-201ENST00000407768 123 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.28□□□□□ -2.2
PTPN4P29074 FCF1P4-201ENST00000448326 183 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 AC097462.1-201ENST00000514125 324 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 SNORA31.10-201ENST00000516482 106 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 RNU6-1012P-201ENST00000516606 109 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 SNORD116.3-201ENST00000517176 78 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 AC019288.1-201ENST00000557918 224 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.28□□□□□ -2.2
PTPN4P29074 AC055872.1-201ENST00000570978 278 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 MIR6078-201ENST00000611069 100 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 AC104985.2-201ENST00000620598 500 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 MIR4272-201ENST00000635924 64 ntBASIC1.28□□□□□ -2.2
PTPN4P29074 Y_RNA.5-201ENST00000362334 102 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 Y_RNA.252-201ENST00000364556 101 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 RNU6-1310P-201ENST00000384153 107 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 RNU6-708P-201ENST00000384217 107 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 RNU6-1031P-201ENST00000384773 107 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 MTCO3P19-201ENST00000415864 321 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.27□□□□□ -2.21
PTPN4P29074 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.27□□□□□ -2.21
PTPN4P29074 AC018865.2-201ENST00000423631 129 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 AC245047.3-201ENST00000429428 127 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.27□□□□□ -2.21
PTPN4P29074 RNU1-123P-201ENST00000458950 160 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.27□□□□□ -2.21
PTPN4P29074 RPL21P9-201ENST00000556149 474 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 AC006600.1-201ENST00000572529 153 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 VN1R91P-201ENST00000594377 169 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 AL929325.1-201ENST00000603096 117 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 AC073413.2-201ENST00000604332 360 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 MIR6504-201ENST00000613520 61 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 AC091895.1-201ENST00000624494 256 ntBASIC1.27□□□□□ -2.21
PTPN4P29074 Y_RNA.27-201ENST00000362540 103 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 Y_RNA.243-201ENST00000364481 109 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 RNU6-407P-201ENST00000365280 104 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 Y_RNA.579-201ENST00000390939 94 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.26□□□□□ -2.21
PTPN4P29074 RPS29P29-201ENST00000456396 171 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 RNA5SP20-201ENST00000515976 84 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 RNU6-976P-201ENST00000516086 111 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 RNU7-172P-201ENST00000517125 64 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 RNU2-12P-201ENST00000517216 168 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 AC090821.2-201ENST00000523552 176 ntBASIC1.26□□□□□ -2.21
PTPN4P29074 AC023442.1-201ENST00000531247 422 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms