Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 EIF4E2P1-201ENST00000393781 255 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 MTCO2P19-201ENST00000427513 598 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 MTND1P4-201ENST00000435196 415 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.02□□□□□ -2.41
HLA-DMBP28068 RNU6-1208P-201ENST00000459588 107 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 RPS3AP17-201ENST00000472594 777 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 RPL30P10-201ENST00000488148 337 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 SNORA40.12-201ENST00000516329 111 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 RNU6-1332P-201ENST00000516666 104 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 AC073534.2-201ENST00000620377 381 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 AC092634.7-201ENST00000621022 103 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.02□□□□□ -2.41
HLA-DMBP28068 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.01□□□□□ -2.41
HLA-DMBP28068 RNA5SP257-201ENST00000363023 116 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 Y_RNA.168-201ENST00000363740 102 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 SNORA2B-201ENST00000384583 137 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 MIR516B2-201ENST00000385190 85 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 RPL30P16-201ENST00000419341 429 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 RNU7-187P-201ENST00000458985 68 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 AC022523.2-201ENST00000561045 150 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 MIR4667-201ENST00000578933 66 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 AC092807.2-201ENST00000609367 243 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 AC078938.1-201ENST00000620993 318 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 AC127459.3-201ENST00000624328 466 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 AC007494.3-201ENST00000624660 743 ntBASIC0.01□□□□□ -2.41
HLA-DMBP28068 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.01□□□□□ -2.41
HLA-DMBP28068 RNA5SP62-201ENST00000363457 110 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 RNU6-1264P-201ENST00000383891 107 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 MIR518A1-201ENST00000385068 85 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 SNORA26.8-201ENST00000391306 124 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 AL353193.1-201ENST00000421444 268 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 AL365203.2-201ENST00000423444 196 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 MTND2P39-201ENST00000457230 764 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0□□□□□ -2.41
HLA-DMBP28068 AC046134.1-201ENST00000514454 666 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 Y_RNA.683-201ENST00000516508 93 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 RNU6-107P-201ENST00000516643 102 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 AC134698.4-201ENST00000523451 826 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 AC026371.1-201ENST00000551867 419 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 MIR5190-201ENST00000581537 80 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 MIR4768-201ENST00000585270 74 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 LARP7P1-201ENST00000605576 316 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 5S_rRNA.13-201ENST00000622298 123 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 MIR4315-1-201ENST00000636800 73 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 MIR4315-2-201ENST00000640925 73 ntBASIC0□□□□□ -2.41
HLA-DMBP28068 SNORD68-201ENST00000363214 84 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 RNU4-66P-201ENST00000365199 138 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 RNU4-20P-201ENST00000365601 151 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AC073464.1-201ENST00000429823 534 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AL606489.2-201ENST00000433886 234 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC-0.01□□□□□ -2.41
HLA-DMBP28068 MTND1P27-201ENST00000451117 902 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 ZNF736P8Y-201ENST00000451913 669 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 HMGN1P10-201ENST00000474557 553 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 SNORA18.7-201ENST00000516910 131 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 MTND2P38-201ENST00000522536 667 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AC093027.1-201ENST00000546698 429 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 NDUFAF4P1-201ENST00000559425 519 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-0.01□□□□□ -2.41
HLA-DMBP28068 EIF1P4-201ENST00000572664 335 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 MIR3612-201ENST00000579753 87 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 Z94722.1-201ENST00000604328 474 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 RBM11P1-201ENST00000604951 799 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 RAC1P9-201ENST00000604990 392 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AL162730.1-201ENST00000605734 292 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AC005828.6-201ENST00000606610 232 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 AL355073.2-201ENST00000612106 557 ntBASIC-0.01□□□□□ -2.41
HLA-DMBP28068 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.02□□□□□ -2.41
HLA-DMBP28068 RNU6-128P-201ENST00000383976 107 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 MIR520H-201ENST00000385126 88 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 MIR873-201ENST00000401120 77 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 RNA5SP95-201ENST00000410319 137 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.02□□□□□ -2.41
HLA-DMBP28068 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC-0.02□□□□□ -2.41
HLA-DMBP28068 ELOCP24-201ENST00000456370 334 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 SNORD123-201ENST00000459473 70 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.02□□□□□ -2.41
HLA-DMBP28068 RNA5SP401-201ENST00000515920 127 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 AF250324.2-201ENST00000608299 610 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 AL591926.4-201ENST00000616895 298 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 MIR4251-201ENST00000635819 61 ntBASIC-0.02□□□□□ -2.41
HLA-DMBP28068 SNORD114-7-201ENST00000362520 77 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 SNORD114-16-201ENST00000363044 70 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 SNORA42.1-201ENST00000363515 137 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 Y_RNA.151-201ENST00000363566 112 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 RNA5SP517-201ENST00000364724 117 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 RNU6-281P-201ENST00000384212 103 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 SNORA40.8-201ENST00000411034 126 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.03□□□□□ -2.41
HLA-DMBP28068 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC-0.03□□□□□ -2.41
HLA-DMBP28068 MIR2115-201ENST00000516657 100 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-0.03□□□□□ -2.41
HLA-DMBP28068 MIR5696-201ENST00000578474 85 ntBASIC-0.03□□□□□ -2.41
HLA-DMBP28068 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.03□□□□□ -2.41
HLA-DMBP28068 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-0.03□□□□□ -2.41
HLA-DMBP28068 MIR410-201ENST00000362222 80 ntBASIC-0.04□□□□□ -2.42
HLA-DMBP28068 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.04□□□□□ -2.42
HLA-DMBP28068 Y_RNA.280-201ENST00000364765 112 ntBASIC-0.04□□□□□ -2.42
HLA-DMBP28068 RNU6-580P-201ENST00000365159 107 ntBASIC-0.04□□□□□ -2.42
HLA-DMBP28068 Y_RNA.381-201ENST00000365666 102 ntBASIC-0.04□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms