Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 RNU4-55P-201ENST00000410731 137 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 Y_RNA.621-201ENST00000411065 96 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 USMG5P1-201ENST00000425964 177 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.05□□□□□ -2.4
LIMS3P0CW19 NDUFA5P4-201ENST00000436704 385 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 SNRPGP12-201ENST00000449481 213 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 MTND1P11-201ENST00000456661 876 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 AC105313.1-201ENST00000509121 353 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 AC022523.2-201ENST00000561045 150 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 MIR4298-201ENST00000584380 73 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 AC005828.6-201ENST00000606610 232 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 AC104260.1-201ENST00000616660 539 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 SNORD114-7-201ENST00000362520 77 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 RNA5SP62-201ENST00000363457 110 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 MIR520H-201ENST00000385126 88 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 ELOCP21-201ENST00000412558 336 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.04□□□□□ -2.4
LIMS3P0CW19 AL590632.1-201ENST00000424289 371 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 USP9YP16-201ENST00000430287 407 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 MTND3P23-201ENST00000431980 347 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 USP9YP23-201ENST00000455085 407 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 ELOCP24-201ENST00000456370 334 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.04□□□□□ -2.4
LIMS3P0CW19 AC087752.4-201ENST00000605911 462 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 AC092954.2-201ENST00000609103 430 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 MIR8070-201ENST00000616510 88 ntBASIC0.04□□□□□ -2.4
LIMS3P0CW19 SNORD44.1-201ENST00000363202 61 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 Y_RNA.370-201ENST00000365589 108 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.03□□□□□ -2.4
LIMS3P0CW19 Y_RNA.405-201ENST00000383979 100 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 Y_RNA.451-201ENST00000384200 100 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 Y_RNA.481-201ENST00000384373 102 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 Y_RNA.524-201ENST00000384564 100 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 Y_RNA.561-201ENST00000384694 100 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 RNA5SP95-201ENST00000410319 137 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 SNORD71-201ENST00000411292 86 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 AL354751.2-201ENST00000415471 210 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 MTATP6P13-201ENST00000438531 667 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 MTND3P7-201ENST00000474435 343 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.03□□□□□ -2.4
LIMS3P0CW19 RNU6-63P-201ENST00000516690 95 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 AC090617.3-201ENST00000573670 475 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 MIR3612-201ENST00000579753 87 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 AC019193.3-201ENST00000609144 554 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 AC091925.1-201ENST00000623204 462 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.03□□□□□ -2.4
LIMS3P0CW19 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.03□□□□□ -2.4
LIMS3P0CW19 MIR410-201ENST00000362222 80 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 RNU6-369P-201ENST00000362515 102 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 MIR518A1-201ENST00000385068 85 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 RNU6-648P-201ENST00000410190 107 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 ERLEC1P1-201ENST00000433806 578 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 HMGN2P32-201ENST00000444648 269 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 SNORA25.12-201ENST00000516202 82 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 AC124303.1-201ENST00000605703 360 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 RNU6-89P-201ENST00000606519 100 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.02□□□□□ -2.41
LIMS3P0CW19 Y_RNA.224-201ENST00000364308 111 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 Y_RNA.376-201ENST00000365638 108 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 Y_RNA.490-201ENST00000384413 102 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 MIR520F-201ENST00000384824 87 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 RNU6-1001P-201ENST00000411265 100 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 AL390729.2-201ENST00000416137 156 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.01□□□□□ -2.41
LIMS3P0CW19 MTND1P26-201ENST00000440488 538 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 RNU6-1132P-201ENST00000459214 107 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.01□□□□□ -2.41
LIMS3P0CW19 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.01□□□□□ -2.41
LIMS3P0CW19 RN7SKP298-201ENST00000515950 94 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 RNA5SP220-201ENST00000516298 104 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 RNU6-977P-201ENST00000516411 103 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 SNORD45.4-201ENST00000516629 73 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 Y_RNA.706-201ENST00000516933 99 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.01□□□□□ -2.41
LIMS3P0CW19 MIR4315-1-201ENST00000636800 73 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 MIR924-201ENST00000638017 53 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 MIR4315-2-201ENST00000640925 73 ntBASIC0.01□□□□□ -2.41
LIMS3P0CW19 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.01□□□□□ -2.41
LIMS3P0CW19 RNU6-1084P-201ENST00000362498 107 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 RNU6-396P-201ENST00000365369 105 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 MIR329-1-201ENST00000385028 80 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 RNA5SP511-201ENST00000410487 115 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 SNORA40.8-201ENST00000411034 126 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0□□□□□ -2.41
LIMS3P0CW19 RNU6-835P-201ENST00000516974 104 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 AL589743.1-201ENST00000551932 2712 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 AC012433.1-201ENST00000588916 398 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 RBM11P1-201ENST00000604951 799 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 LARP7P1-201ENST00000605576 316 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 MIR6734-201ENST00000621166 68 ntBASIC0□□□□□ -2.41
LIMS3P0CW19 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0□□□□□ -2.41
LIMS3P0CW19 ZNF299P-201ENST00000406845 1804 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 RNU6-222P-201ENST00000362438 107 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 snoU2-30.1-201ENST00000365012 70 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 SNORA75-201ENST00000384158 137 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 Y_RNA.498-201ENST00000384460 102 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 MIR522-201ENST00000385071 87 ntBASIC-0.01□□□□□ -2.41
LIMS3P0CW19 RNU2-70P-201ENST00000410718 179 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 238.3 ms