Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 RNU6-1016P-201ENST00000516689 94 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 U6.115-201ENST00000636045 103 ntBASIC0.89□□□□□ -2.27
CLDN3O15551 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
CLDN3O15551 Y_RNA.3-201ENST00000362331 103 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 RNY1P16-201ENST00000363063 111 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 RNU1-36P-201ENST00000365130 165 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 MIR200A-201ENST00000384875 90 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 MIR873-201ENST00000401120 77 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 AC074085.1-201ENST00000413598 418 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.88□□□□□ -2.27
CLDN3O15551 MTND5P5-201ENST00000503764 376 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.88□□□□□ -2.27
CLDN3O15551 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.88□□□□□ -2.27
CLDN3O15551 RNU6-351P-201ENST00000516097 100 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 RNU6-1096P-201ENST00000517089 102 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 RNU6-1116P-201ENST00000517269 99 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 AC090142.3-201ENST00000519012 385 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.88□□□□□ -2.27
CLDN3O15551 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.88□□□□□ -2.27
CLDN3O15551 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.88□□□□□ -2.27
CLDN3O15551 U4.5-201ENST00000617137 123 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 MIR3674-201ENST00000636576 68 ntBASIC0.88□□□□□ -2.27
CLDN3O15551 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.87□□□□□ -2.27
CLDN3O15551 MIRLET7C-201ENST00000362160 84 ntBASIC0.87□□□□□ -2.27
CLDN3O15551 Y_RNA.358-201ENST00000365491 99 ntBASIC0.87□□□□□ -2.27
CLDN3O15551 SNORD115-47-201ENST00000391226 86 ntBASIC0.87□□□□□ -2.27
CLDN3O15551 MIR891A-201ENST00000401237 79 ntBASIC0.87□□□□□ -2.27
CLDN3O15551 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.87□□□□□ -2.27
CLDN3O15551 AC026782.1-201ENST00000512952 449 ntBASIC0.87□□□□□ -2.27
CLDN3O15551 SNORD111.1-201ENST00000516421 86 ntBASIC0.87□□□□□ -2.27
CLDN3O15551 MIR3688-2-201ENST00000636963 87 ntBASIC0.87□□□□□ -2.27
CLDN3O15551 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
CLDN3O15551 RNU6-874P-201ENST00000362390 105 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 RNU4-41P-201ENST00000364426 143 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 RNU6-969P-201ENST00000383900 105 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 RNU6-163P-201ENST00000384396 106 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 Y_RNA.594-201ENST00000410373 140 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 RNU5A-5P-201ENST00000411054 116 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 AC114482.1-201ENST00000418010 247 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 AC004941.2-201ENST00000427009 228 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 AC092423.1-201ENST00000430165 186 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 Z98949.2-201ENST00000440996 144 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 U8.22-201ENST00000459141 133 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 RNU6-329P-201ENST00000459618 107 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 AC092989.1-201ENST00000481235 277 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.86□□□□□ -2.27
CLDN3O15551 RNU6-63P-201ENST00000516690 95 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 AC105029.1-201ENST00000520250 669 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 AC108706.1-201ENST00000611053 297 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.86□□□□□ -2.27
CLDN3O15551 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.86□□□□□ -2.27
CLDN3O15551 Y_RNA.516-201ENST00000384541 124 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 MIR526A1-201ENST00000384897 85 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 RNU6-1050P-201ENST00000410388 107 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 RPS3AP1-201ENST00000413190 320 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.85□□□□□ -2.27
CLDN3O15551 RPS3AP52-201ENST00000435639 297 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.85□□□□□ -2.27
CLDN3O15551 RPS26P48-201ENST00000491713 339 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC0.85□□□□□ -2.27
CLDN3O15551 PSMC1P5-201ENST00000512850 177 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 SNORA40.9-201ENST00000515895 93 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 Y_RNA.670-201ENST00000516255 105 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 MIR4653-201ENST00000585107 83 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.85□□□□□ -2.27
CLDN3O15551 AC013244.2-201ENST00000603396 103 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 AL096861.1-201ENST00000610899 123 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 MIR6788-201ENST00000618842 66 ntBASIC0.85□□□□□ -2.27
CLDN3O15551 MIR410-201ENST00000362222 80 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 SNORD68-201ENST00000363214 84 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU6-454P-201ENST00000364292 107 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU6-117P-201ENST00000365415 107 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU6-510P-201ENST00000391239 108 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 MIR548F5-201ENST00000408421 86 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 MIR548J-201ENST00000408833 112 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 Y_RNA.621-201ENST00000411065 96 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU2-64P-201ENST00000411315 191 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.84□□□□□ -2.27
CLDN3O15551 PIGPP3-201ENST00000425307 415 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AL589823.1-201ENST00000429577 183 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 SUMO1P2-201ENST00000452524 304 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AC245047.8-201ENST00000456455 284 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU7-90P-201ENST00000459216 62 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU7-21P-201ENST00000459430 62 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 CYCTP-201ENST00000504253 315 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AC105313.1-201ENST00000509121 353 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU6-197P-201ENST00000516680 100 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 Y_RNA.708-201ENST00000516950 96 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AL358944.1-201ENST00000528537 144 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.84□□□□□ -2.27
CLDN3O15551 CYP3A137P-201ENST00000562436 69 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AC018638.8-201ENST00000588755 281 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AC120024.3-201ENST00000603167 156 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 AC004832.4-201ENST00000608952 331 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 MIR6866-201ENST00000638146 69 ntBASIC0.84□□□□□ -2.27
CLDN3O15551 RNU6-833P-201ENST00000363486 107 ntBASIC0.83□□□□□ -2.28
CLDN3O15551 RNU6-593P-201ENST00000364716 112 ntBASIC0.83□□□□□ -2.28
CLDN3O15551 SNORD116-13-201ENST00000384408 92 ntBASIC0.83□□□□□ -2.28
CLDN3O15551 SNORA75.2-201ENST00000391138 150 ntBASIC0.83□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 135 ms