Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU5E-6P-201ENST00000365574 115 ntBASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 AC004866.1-201ENST00000411748 78 ntBASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 AC097462.1-201ENST00000514125 324 ntBASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 RNA5SP454-201ENST00000517231 127 ntBASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 5S_rRNA.15-201ENST00000611169 127 ntBASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 uc_338.4-201ENST00000616635 176 ntBASIC-1.54□□□□□ -2.66
CCDC88BA6NC98 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 RNY4P6-201ENST00000363667 96 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 SNORA63C-201ENST00000364578 129 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 RNU6-336P-201ENST00000364891 107 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 Y_RNA.370-201ENST00000365589 108 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 MIR15B-201ENST00000385045 98 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 BTBD7P2-201ENST00000441962 620 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 SNORA18.4-201ENST00000516440 124 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 RNU6-706P-201ENST00000517229 104 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 AC091178.2-201ENST00000584401 117 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 AC010205.1-201ENST00000616668 449 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 AC010332.2-201ENST00000613083 1904 ntBASIC-1.55□□□□□ -2.66
CCDC88BA6NC98 RNU6-1266P-201ENST00000362794 105 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 RNU5B-1-201ENST00000363286 116 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 RNU5E-10P-201ENST00000363506 118 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 TRAJ57-201ENST00000390482 63 ntAPPRIS P1 BASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 RNU6-1007P-201ENST00000516586 107 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 Y_RNA.692-201ENST00000516627 105 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 ADI1P3-201ENST00000549509 470 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 AC117470.1-201ENST00000381974 330 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 SNORD28B-201ENST00000390993 75 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 ELOCP17-201ENST00000414751 326 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 AC092447.3-201ENST00000426027 686 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 ZNF736P8Y-201ENST00000451913 669 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 AC140658.3-201ENST00000567603 271 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 AC121334.2-201ENST00000605387 271 ntBASIC-1.56□□□□□ -2.66
CCDC88BA6NC98 Y_RNA.181-201ENST00000363872 101 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 RNU6-960P-201ENST00000364056 120 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 SNORA22B-201ENST00000383876 138 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 MT-TY-201ENST00000387409 66 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 AL358934.1-201ENST00000432346 324 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 AL445193.1-201ENST00000441183 141 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 snoU13.6-201ENST00000458785 104 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 MTND3P25-201ENST00000509243 135 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 RNA5SP461-201ENST00000516451 104 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 RNU6-135P-201ENST00000516769 101 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 RNU7-172P-201ENST00000517125 64 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 AL157687.1-201ENST00000554853 619 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 AC026470.2-201ENST00000561492 181 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 MIR3115-201ENST00000577915 68 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 MIR5692A1-201ENST00000580523 69 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 MIR4639-201ENST00000584938 69 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 AC005609.4-201ENST00000625071 447 ntBASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.57□□□□□ -2.66
CCDC88BA6NC98 U6.112-201ENST00000384129 70 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 MIR876-201ENST00000401147 81 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 snoU13.16-201ENST00000459350 104 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 AC069431.2-201ENST00000604149 1099 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 AL359999.1-201ENST00000604513 294 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 AP002782.1-201ENST00000623107 614 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 AL162376.1-201ENST00000624117 175 ntBASIC-1.58□□□□□ -2.66
CCDC88BA6NC98 Y_RNA.28-201ENST00000362554 111 ntBASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 SNORD115-2-201ENST00000362842 82 ntBASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 Y_RNA.174-201ENST00000363781 105 ntBASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 RNY3P13-201ENST00000365542 102 ntBASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 MIR516B1-201ENST00000385211 90 ntBASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 HGF-207ENST00000453018 721 ntTSL 3 BASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 SNORD65B-201ENST00000459126 73 ntBASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 RNA5SP216-201ENST00000516111 123 ntBASIC-1.59□□□□□ -2.66
CCDC88BA6NC98 RNU6-777P-201ENST00000364265 104 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 RNU6-481P-201ENST00000384194 107 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 RNU6-1104P-201ENST00000384723 104 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 AP000542.1-201ENST00000448473 371 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 RNU6-1265P-201ENST00000516342 103 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 MIR4789-201ENST00000577469 82 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 AC100814.1-201ENST00000606963 623 ntBASIC-1.6□□□□□ -2.67
CCDC88BA6NC98 AL590002.1-201ENST00000406554 418 ntBASIC-1.61□□□□□ -2.67
CCDC88BA6NC98 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC-1.61□□□□□ -2.67
CCDC88BA6NC98 AC091133.4-201ENST00000511142 308 ntBASIC-1.61□□□□□ -2.67
CCDC88BA6NC98 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.61□□□□□ -2.67
CCDC88BA6NC98 AC108747.1-201ENST00000609508 535 ntBASIC-1.61□□□□□ -2.67
CCDC88BA6NC98 MTND1P7-201ENST00000632801 297 ntBASIC-1.61□□□□□ -2.67
CCDC88BA6NC98 RNU6-1084P-201ENST00000362498 107 ntBASIC-1.62□□□□□ -2.67
CCDC88BA6NC98 MIR320C1-201ENST00000408566 88 ntBASIC-1.62□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms