Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC011406.1-201ENST00000512440 370 ntBASIC2.45□□□□□ -2.02
PCDHA1Q9Y5I3 RNU6-1146P-201ENST00000516282 102 ntBASIC2.45□□□□□ -2.02
PCDHA1Q9Y5I3 MIR3145-201ENST00000580727 82 ntBASIC2.45□□□□□ -2.02
PCDHA1Q9Y5I3 AL353149.1-201ENST00000610667 244 ntBASIC2.45□□□□□ -2.02
PCDHA1Q9Y5I3 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.45□□□□□ -2.02
PCDHA1Q9Y5I3 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
PCDHA1Q9Y5I3 RNA5SP493-201ENST00000364115 91 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 HSPE1P13-201ENST00000451143 297 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 RNU1-104P-201ENST00000517280 175 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 MIR3169-201ENST00000578032 83 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 AL512605.2-201ENST00000592972 256 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 AL031274.2-201ENST00000599419 203 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 BX284668.6-201ENST00000606899 438 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 CENPCP1-201ENST00000533085 2578 ntBASIC2.44□□□□□ -2.02
PCDHA1Q9Y5I3 SNORD114-1-201ENST00000362705 72 ntBASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 RNU6-379P-201ENST00000363813 104 ntBASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 SNORA67.1-201ENST00000364749 141 ntBASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 SNORA20.1-201ENST00000364790 130 ntBASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 MIR504-201ENST00000385065 83 ntBASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.673-201ENST00000516306 88 ntBASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 RPL21P9-201ENST00000556149 474 ntBASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.43□□□□□ -2.02
PCDHA1Q9Y5I3 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 RNU1-58P-201ENST00000362413 163 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 snoU2-30.2-201ENST00000362805 70 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.275-201ENST00000364726 110 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.368-201ENST00000365547 113 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 RNU1-52P-201ENST00000384190 164 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 MIR1253-201ENST00000408273 105 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 AC010154.1-201ENST00000425857 269 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 RPS26P55-201ENST00000471178 356 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 RNA5SP20-201ENST00000515976 84 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 RNA5SP402-201ENST00000517148 110 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 AL137100.2-201ENST00000555786 315 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 AC010900.2-201ENST00000604508 210 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 MIR7843-201ENST00000622274 79 ntBASIC2.42□□□□□ -2.02
PCDHA1Q9Y5I3 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 MIRLET7G-201ENST00000362280 84 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.60-201ENST00000362831 98 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.124-201ENST00000363339 93 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.217-201ENST00000364214 105 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.287-201ENST00000364853 94 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.477-201ENST00000384352 108 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 HMGN2P34-201ENST00000437647 269 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 ATP5J2P3-201ENST00000451550 258 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 Y_RNA.641-201ENST00000459414 105 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 AC136628.3-201ENST00000521868 290 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 MIR338-201ENST00000636369 67 ntBASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.41□□□□□ -2.02
PCDHA1Q9Y5I3 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.4□□□□□ -2.02
PCDHA1Q9Y5I3 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-23P-201ENST00000363283 107 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 RNU1-96P-201ENST00000364163 162 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.310-201ENST00000365063 113 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.456-201ENST00000384232 111 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.539-201ENST00000384635 107 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 AL117342.1-201ENST00000404861 406 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 AL445646.1-201ENST00000431784 216 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 AC104435.1-201ENST00000483483 166 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 TRAPPC2P7-201ENST00000509650 231 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-1041P-201ENST00000516254 102 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 RNA5SP82-201ENST00000516707 92 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 SNORD14A-201ENST00000606526 91 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 U6.73-201ENST00000619194 103 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 ZNF271P-202ENST00000465539 1970 ntBASIC2.4□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.82-201ENST00000363000 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.92-201ENST00000363043 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.235-201ENST00000364412 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-740P-201ENST00000364734 105 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.277-201ENST00000364754 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.306-201ENST00000365015 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.312-201ENST00000365089 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.322-201ENST00000365151 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-407P-201ENST00000365280 104 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 HMGN2P39-201ENST00000398005 273 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6ATAC19P-201ENST00000408096 110 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 MIR1289-2-201ENST00000408360 111 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 RNU6-847P-201ENST00000411115 108 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 HMGN2P3-201ENST00000433603 273 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 HMGN2P5-201ENST00000436882 273 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 Y_RNA.650-201ENST00000459002 102 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 RPS27P22-201ENST00000478056 241 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 RPL36AP21-201ENST00000490372 323 ntBASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.39□□□□□ -2.03
PCDHA1Q9Y5I3 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 122.5 ms