Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 snoU13.18-201ENST00000459483 104 ntBASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 HMGN2P26-201ENST00000463169 339 ntBASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 RNU6-1114P-201ENST00000516022 107 ntBASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 AC092954.2-201ENST00000609103 430 ntBASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 MIR5087-201ENST00000635826 76 ntBASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.37□□□□□ -2.35
RHBDD3Q9Y3P4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 SNORD114-7-201ENST00000362520 77 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 RNY1P14-201ENST00000384426 108 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 RNU6-1105P-201ENST00000384774 107 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 MIR517A-201ENST00000385001 87 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 RNU1-139P-201ENST00000391307 165 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC244023.1-201ENST00000426884 112 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC083904.1-201ENST00000487828 231 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 RNU4-57P-201ENST00000515980 135 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 SNORA74.3-201ENST00000517108 154 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC145350.1-201ENST00000567426 208 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 SNORA4-201ENST00000584302 138 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC242498.1-201ENST00000604134 111 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC124303.1-201ENST00000605703 360 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC243994.1-201ENST00000618627 109 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 AC127459.3-201ENST00000624328 466 ntBASIC0.36□□□□□ -2.35
RHBDD3Q9Y3P4 MIR520C-201ENST00000385005 87 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 MIR873-201ENST00000401120 77 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 AC243428.1-201ENST00000421099 264 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 AC244098.3-201ENST00000424803 96 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 MTND1P11-201ENST00000456661 876 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 AC019193.3-201ENST00000609144 554 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 AL391262.2-201ENST00000622466 494 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 AL008636.1-201ENST00000625038 1018 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 AC068137.3-201ENST00000639191 341 ntBASIC0.35□□□□□ -2.35
RHBDD3Q9Y3P4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
RHBDD3Q9Y3P4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6-1085P-201ENST00000363576 107 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6-281P-201ENST00000384212 103 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 MIR1185-1-201ENST00000408598 86 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6-994P-201ENST00000410507 111 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 RPS20P10-201ENST00000451209 253 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 PCNPP5-201ENST00000452246 481 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 RNU7-43P-201ENST00000516554 64 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 AC090617.3-201ENST00000573670 475 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 MIR6515-201ENST00000619843 57 ntBASIC0.34□□□□□ -2.36
RHBDD3Q9Y3P4 AC090625.1-201ENST00000357130 210 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6-596P-201ENST00000365395 98 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6-117P-201ENST00000365415 107 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 MIR136-201ENST00000385207 82 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6-1096P-201ENST00000517089 102 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 RNU6-1116P-201ENST00000517269 99 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 AC011195.1-201ENST00000578177 177 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 AL138726.1-201ENST00000614873 333 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 MIR6513-201ENST00000621188 64 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 MIR6516-201ENST00000630554 81 ntBASIC0.33□□□□□ -2.36
RHBDD3Q9Y3P4 AL442644.1-201ENST00000454390 3105 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 MIR410-201ENST00000362222 80 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 U8.5-201ENST00000364528 136 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 SNORD14.1-201ENST00000365609 90 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 SNORA50A-201ENST00000384225 134 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 Y_RNA.508-201ENST00000384502 114 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 MIR1827-201ENST00000408549 66 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 USP9YP16-201ENST00000430287 407 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 MTATP6P13-201ENST00000438531 667 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 USP9YP23-201ENST00000455085 407 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AC074133.1-201ENST00000515696 183 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 RN7SKP164-201ENST00000516138 266 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AF235103.2-201ENST00000525753 346 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AC036111.3-201ENST00000526389 112 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AC121247.2-201ENST00000604776 136 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 RMST_2.1-201ENST00000617263 136 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 AC134026.1-201ENST00000623249 2239 ntBASIC0.32□□□□□ -2.36
RHBDD3Q9Y3P4 RNU1-133P-201ENST00000364867 167 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 Y_RNA.355-201ENST00000365462 98 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 Y_RNA.530-201ENST00000384587 101 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 SNORD105-201ENST00000386910 85 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 MIR1298-201ENST00000408783 112 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 SEPT14P3-201ENST00000439401 183 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 AL732372.2-207ENST00000445840 183 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 UQCRBP2-201ENST00000447827 297 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 SEPT14P2-201ENST00000453405 183 ntBASIC0.31□□□□□ -2.36
RHBDD3Q9Y3P4 SEPT14P4-201ENST00000513445 186 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 195.2 ms