Protein–RNA interactions for Protein: Q9Y3E1

HDGFL3, Hepatoma-derived growth factor-related protein 3, humanhuman

Predictions only

Length 203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3Q9Y3E1 RNU6-541P-201ENST00000384709 110 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 EIF4E2P1-201ENST00000393781 255 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 AL353193.1-201ENST00000421444 268 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 PIGPP3-201ENST00000425307 415 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 AL606489.2-201ENST00000433886 234 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 AL137792.2-201ENST00000443484 235 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 MTND1P27-201ENST00000451117 902 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 RNU6-1208P-201ENST00000459588 107 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 RPL30P10-201ENST00000488148 337 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 MTCO2P30-201ENST00000503662 364 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 AC114811.1-201ENST00000507207 168 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 RNU6-1278P-201ENST00000516130 107 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 MIR4764-201ENST00000580680 88 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 Z94722.1-201ENST00000604328 474 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 AC092807.2-201ENST00000609367 243 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 AC008133.2-201ENST00000624540 351 ntBASIC0.11□□□□□ -2.39
HDGFL3Q9Y3E1 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 MIR1-1-201ENST00000362147 71 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 RNU6-407P-201ENST00000365280 104 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 SNORD14.1-201ENST00000365609 90 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 MIR489-201ENST00000384923 84 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 MIR573-201ENST00000384964 99 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 MTCYBP4-201ENST00000401524 249 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 MIR1302-7-201ENST00000408841 72 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 PCNPP5-201ENST00000452246 481 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 RNU7-187P-201ENST00000458985 68 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 AC092989.1-201ENST00000481235 277 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 RNU6-1096P-201ENST00000517089 102 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 AC026371.1-201ENST00000551867 419 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 MIR4431-201ENST00000579990 94 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 MIR4300-201ENST00000581016 96 ntBASIC0.1□□□□□ -2.39
HDGFL3Q9Y3E1 RNU4-66P-201ENST00000365199 138 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 RNU4-20P-201ENST00000365601 151 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 RNU6-1304P-201ENST00000411374 106 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 RPL30P16-201ENST00000419341 429 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC073464.1-201ENST00000429823 534 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC105313.1-201ENST00000509121 353 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 RNA5SP401-201ENST00000515920 127 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 RNU7-43P-201ENST00000516554 64 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 RNU6-107P-201ENST00000516643 102 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC011712.1-201ENST00000588959 234 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC100812.1-201ENST00000607622 580 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC022960.3-201ENST00000619794 441 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 AC121333.1-201ENST00000567488 2709 ntBASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.09□□□□□ -2.4
HDGFL3Q9Y3E1 MIR103A1-201ENST00000362165 78 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 RNU6-654P-201ENST00000364373 107 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 U8.5-201ENST00000364528 136 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 Y_RNA.381-201ENST00000365666 102 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 AC117470.1-201ENST00000381974 330 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 MIR136-201ENST00000385207 82 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 RNA5SP299-201ENST00000391203 116 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 MIR1295A-201ENST00000408463 79 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 MTCO3P10-201ENST00000455912 772 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 RPS3AP17-201ENST00000472594 777 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 AC074133.1-201ENST00000515696 183 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 Y_RNA.683-201ENST00000516508 93 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 MIR4762-201ENST00000585261 75 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 AC015726.2-201ENST00000620112 122 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 AC127459.3-201ENST00000624328 466 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.08□□□□□ -2.4
HDGFL3Q9Y3E1 RNU6-369P-201ENST00000362515 102 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 RNU4-45P-201ENST00000365469 141 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 MIR15B-201ENST00000385045 98 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 MIR516B2-201ENST00000385190 85 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 SNORD37.1-201ENST00000390968 65 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 AC243428.1-201ENST00000421099 264 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 AC134698.4-201ENST00000523451 826 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 AC040904.1-201ENST00000590850 223 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 AC023932.2-201ENST00000603176 175 ntBASIC0.07□□□□□ -2.4
HDGFL3Q9Y3E1 MIR18A-201ENST00000362310 71 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 SNORD44.1-201ENST00000363202 61 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 Y_RNA.112-201ENST00000363250 102 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 RNU6-790P-201ENST00000384479 105 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 RNY1P4-201ENST00000384595 115 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 MIR613-201ENST00000385248 95 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 RNU6-613P-201ENST00000410412 108 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 MTND1P4-201ENST00000435196 415 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 MTND4LP16-201ENST00000440828 295 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 AC046134.1-201ENST00000514454 666 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 SNORA62.5-201ENST00000516634 120 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 AC027449.1-201ENST00000608890 407 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
HDGFL3Q9Y3E1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.05□□□□□ -2.4
HDGFL3Q9Y3E1 SNORD68-201ENST00000363214 84 ntBASIC0.05□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms