Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MTCO3P19-201ENST00000415864 321 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.26□□□□□ -2.21
LHX3Q9UBR4 AC092473.1-201ENST00000441098 221 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 RNU7-169P-201ENST00000459456 61 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 SUMO2P16-201ENST00000519475 264 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 AL162424.1-201ENST00000602325 221 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 AC073413.2-201ENST00000604332 360 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 AL161722.3-201ENST00000605789 2983 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 MTND4LP32-201ENST00000636111 270 ntBASIC1.26□□□□□ -2.21
LHX3Q9UBR4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
LHX3Q9UBR4 RNU6-407P-201ENST00000365280 104 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.577-201ENST00000384794 101 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 MIR625-201ENST00000385047 85 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 SNORA69.1-201ENST00000390904 137 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 RNU6-321P-201ENST00000410912 106 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 RAB28P5-201ENST00000427490 651 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.25□□□□□ -2.21
LHX3Q9UBR4 PGBD4P5-201ENST00000445958 426 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 RPS29P23-201ENST00000458635 123 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.653-201ENST00000459091 95 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 AC005840.1-201ENST00000498412 377 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 AL390123.1-201ENST00000603216 237 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 PRR13P7-201ENST00000605538 430 ntBASIC1.25□□□□□ -2.21
LHX3Q9UBR4 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
LHX3Q9UBR4 SNORA72.1-201ENST00000363485 129 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 RNU6-454P-201ENST00000364292 107 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.327-201ENST00000365201 102 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 RNU6-926P-201ENST00000384075 107 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 RNA5SP475-201ENST00000410568 110 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 MRPS18CP6-201ENST00000423587 223 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.24□□□□□ -2.21
LHX3Q9UBR4 AC097462.1-201ENST00000514125 324 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 RNU6-470P-201ENST00000515954 104 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 RNU7-172P-201ENST00000517125 64 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 MIR2355-201ENST00000517199 87 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.24□□□□□ -2.21
LHX3Q9UBR4 RPL21P9-201ENST00000556149 474 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 UBE2V2P2-201ENST00000587677 504 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 AC080078.3-201ENST00000605407 463 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 AL021879.1-201ENST00000611756 288 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 MIR3674-201ENST00000636576 68 ntBASIC1.24□□□□□ -2.21
LHX3Q9UBR4 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.24□□□□□ -2.21
LHX3Q9UBR4 MIR410-201ENST00000362222 80 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RNU1-22P-201ENST00000363334 158 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 SNORD26-201ENST00000384147 75 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RNU6-1297P-201ENST00000384415 104 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.592-201ENST00000410274 109 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RPL30P13-201ENST00000418873 348 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.23□□□□□ -2.21
LHX3Q9UBR4 AC018865.2-201ENST00000423631 129 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 MTND4P28-201ENST00000426217 387 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RPL30P7-201ENST00000479312 323 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RNU6-408P-201ENST00000515910 100 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RNA5SP20-201ENST00000515976 84 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RNU6-277P-201ENST00000516272 106 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 AC090821.2-201ENST00000523552 176 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 RAB11AP2-201ENST00000545905 639 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 AL512310.8-201ENST00000550183 120 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 MIR6079-201ENST00000635807 62 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 U6.115-201ENST00000636045 103 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 MIR1302-1-201ENST00000637932 143 ntBASIC1.23□□□□□ -2.21
LHX3Q9UBR4 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.22□□□□□ -2.21
LHX3Q9UBR4 RNY1P10-201ENST00000363268 113 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.259-201ENST00000364619 101 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.303-201ENST00000364998 94 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 RNU6-53P-201ENST00000365367 106 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 Y_RNA.605-201ENST00000410577 105 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.22□□□□□ -2.21
LHX3Q9UBR4 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.22□□□□□ -2.21
LHX3Q9UBR4 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.22□□□□□ -2.21
LHX3Q9UBR4 SNORA28-201ENST00000606769 126 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 AC073349.3-201ENST00000617616 186 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 AL513423.1-201ENST00000621695 132 ntBASIC1.22□□□□□ -2.21
LHX3Q9UBR4 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.22□□□□□ -2.21
LHX3Q9UBR4 SNORA27.1-201ENST00000362604 124 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 RNU6-392P-201ENST00000364926 101 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.314-201ENST00000365114 102 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.387-201ENST00000383918 102 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 SNORD116-29-201ENST00000384516 83 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 MIR562-201ENST00000384894 95 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 SNORA12.1-201ENST00000390873 148 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.21□□□□□ -2.22
LHX3Q9UBR4 AC091951.2-201ENST00000500762 203 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 CYP3A52P-201ENST00000563326 91 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 AL132765.2-201ENST00000610812 351 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 AC133104.2-201ENST00000615272 193 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 SNORD3E-202ENST00000627253 216 ntBASIC1.21□□□□□ -2.22
LHX3Q9UBR4 MIR26B-201ENST00000362251 77 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.124-201ENST00000363339 93 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.164-201ENST00000363709 102 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 RNU6-961P-201ENST00000363893 105 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.267-201ENST00000364679 109 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC1.2□□□□□ -2.22
LHX3Q9UBR4 Y_RNA.384-201ENST00000383909 102 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 RNU6-1310P-201ENST00000384153 107 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 RNU6-376P-201ENST00000384731 106 ntBASIC1.2□□□□□ -2.22
LHX3Q9UBR4 RNY4P36-201ENST00000391116 96 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms