Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 Y_RNA.605-201ENST00000410577 105 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AC010469.2-201ENST00000496412 480 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AC010598.1-201ENST00000510378 103 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 RNU6-408P-201ENST00000515910 100 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AC144568.1-201ENST00000520139 137 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AL442163.3-201ENST00000554110 156 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 MIR4421-201ENST00000578133 69 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AL117336.2-201ENST00000602435 335 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AC091925.1-201ENST00000623204 462 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 MIR3674-201ENST00000636576 68 ntBASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
RPF1Q9H9Y2 AC100821.1-201ENST00000523153 2479 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 RNU4-79P-201ENST00000362764 141 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 Y_RNA.146-201ENST00000363549 102 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 RNA5SP247-201ENST00000411181 105 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 RPS20P15-201ENST00000412792 311 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 AC099799.1-201ENST00000439809 192 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 MRPS10P1-201ENST00000448483 130 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 AC245517.4-201ENST00000448601 281 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 HSPE1P24-201ENST00000450782 238 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 snoU13.27-201ENST00000459278 104 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 RPS27P22-201ENST00000478056 241 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 RNU6-970P-201ENST00000516312 107 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 MIR4438-201ENST00000585271 93 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 AL157834.3-201ENST00000615543 103 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 U2.1-201ENST00000618978 145 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 U6.115-201ENST00000636045 103 ntBASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
RPF1Q9H9Y2 Y_RNA.5-201ENST00000362334 102 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 Y_RNA.327-201ENST00000365201 102 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 RNY3P4-201ENST00000384428 101 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 Y_RNA.579-201ENST00000390939 94 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 AL161935.2-201ENST00000414627 60 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 AC010154.1-201ENST00000425857 269 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 RNU7-99P-201ENST00000516271 62 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 SNORA31.10-201ENST00000516482 106 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 AC011476.5-201ENST00000615594 130 ntBASIC1.49□□□□□ -2.17
RPF1Q9H9Y2 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 RNU6-271P-201ENST00000363858 105 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 RNU6-997P-201ENST00000384725 107 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 RN7SKP51-201ENST00000410781 304 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 AC236972.2-201ENST00000434979 310 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 RNU6-1012P-201ENST00000516606 109 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 AL929325.1-201ENST00000603096 117 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 MIR8063-201ENST00000621930 81 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 AC006435.5-201ENST00000624486 112 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 MIR4272-201ENST00000635924 64 ntBASIC1.48□□□□□ -2.17
RPF1Q9H9Y2 ICE2P2-201ENST00000483823 2787 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 SNORA27.1-201ENST00000362604 124 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 SNORD33-201ENST00000362761 85 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 RNU1-22P-201ENST00000363334 158 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 Y_RNA.124-201ENST00000363339 93 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 Y_RNA.428-201ENST00000384078 102 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 MIR194-1-201ENST00000384892 85 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 SNORA12.1-201ENST00000390873 148 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 RNA5SP475-201ENST00000410568 110 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC018865.2-201ENST00000423631 129 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC099513.1-201ENST00000490423 301 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC097462.1-201ENST00000514125 324 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 RNA5SP445-201ENST00000515889 115 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 SNORD116.3-201ENST00000517176 78 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC023442.1-201ENST00000531247 422 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC006600.1-201ENST00000572529 153 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC073413.2-201ENST00000604332 360 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC005828.6-201ENST00000606610 232 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 AC004467.1-201ENST00000615678 330 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 U6.92-201ENST00000636464 89 ntBASIC1.47□□□□□ -2.17
RPF1Q9H9Y2 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 MIR302D-201ENST00000362275 68 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.101-201ENST00000363154 102 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 RNU6-407P-201ENST00000365280 104 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.419-201ENST00000384041 102 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 MT-TD-201ENST00000387419 68 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 RPS26P55-201ENST00000471178 356 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 RNA5SP20-201ENST00000515976 84 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 Y_RNA.661-201ENST00000516003 99 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 RNU6-966P-201ENST00000516479 104 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 RNU4-77P-201ENST00000516692 156 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 RNU6-902P-201ENST00000517212 91 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 MIR4709-201ENST00000577272 72 ntBASIC1.46□□□□□ -2.18
RPF1Q9H9Y2 AC092447.9-201ENST00000603395 144 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 172.2 ms