Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.97□□□□□ -2.25
RPAP1Q9BWH6 SNORA28-201ENST00000606769 126 ntBASIC0.97□□□□□ -2.25
RPAP1Q9BWH6 AC093783.1-201ENST00000612976 329 ntBASIC0.97□□□□□ -2.25
RPAP1Q9BWH6 MIR6128-201ENST00000615528 109 ntBASIC0.97□□□□□ -2.25
RPAP1Q9BWH6 MIR6513-201ENST00000621188 64 ntBASIC0.97□□□□□ -2.25
RPAP1Q9BWH6 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.97□□□□□ -2.25
RPAP1Q9BWH6 Y_RNA.89-201ENST00000363031 102 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.106-201ENST00000363189 100 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 RNU1-124P-201ENST00000363861 145 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 RNU6-842P-201ENST00000384269 107 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AC009161.1-201ENST00000417306 376 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 STAG3L5P-204ENST00000443759 179 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.706-201ENST00000516933 99 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 MIR4778-201ENST00000577635 80 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AC100812.1-201ENST00000607622 580 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 GHRLOS.1-201ENST00000610995 70 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 MIR6079-201ENST00000635807 62 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.318-201ENST00000365131 97 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AL355796.1-201ENST00000406706 323 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 MTCO3P19-201ENST00000415864 321 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 USP9YP16-201ENST00000430287 407 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 HSPE1P13-201ENST00000451143 297 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 USP9YP23-201ENST00000455085 407 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 SNORD5.1-201ENST00000458800 75 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 RNA5SP168-201ENST00000516642 112 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 RNU7-172P-201ENST00000517125 64 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AC093023.1-201ENST00000547375 507 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 MIR1273G-201ENST00000577677 100 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AL512605.2-201ENST00000592972 256 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 AL590095.2-201ENST00000604136 117 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.96□□□□□ -2.26
RPAP1Q9BWH6 RNU6-222P-201ENST00000362438 107 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 RNA5SP457-201ENST00000363657 124 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.265-201ENST00000364677 108 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.301-201ENST00000364990 103 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.450-201ENST00000384198 113 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 SNORA20B-201ENST00000384220 132 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 MIR653-201ENST00000385279 96 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 MTND1P17-201ENST00000448961 204 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 AC097462.1-201ENST00000514125 324 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 AL121579.1-201ENST00000555129 305 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 RPL21P9-201ENST00000556149 474 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 AC090617.3-201ENST00000573670 475 ntBASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.95□□□□□ -2.26
RPAP1Q9BWH6 MTND5P16-201ENST00000460269 1703 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 RNU6-199P-201ENST00000362954 107 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.157-201ENST00000363638 102 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.573-201ENST00000384763 105 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 RNA5SP118-201ENST00000410385 109 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 RNU6-1054P-201ENST00000411293 104 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 AC048334.1-201ENST00000477975 159 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 AC105758.1-201ENST00000506038 399 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 AC046134.1-201ENST00000514454 666 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 SNORA31.2-201ENST00000516019 134 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 AC013244.2-201ENST00000603396 103 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 MIR3662-201ENST00000637030 95 ntBASIC0.94□□□□□ -2.26
RPAP1Q9BWH6 AC008163.1-202ENST00000636004 2889 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.30-201ENST00000362572 97 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 MIR329-1-201ENST00000385028 80 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 RNU6-910P-201ENST00000390844 107 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 U8.16-201ENST00000391279 133 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 MTCYBP4-201ENST00000401524 249 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 ELOCP21-201ENST00000412558 336 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 EIF1P2-201ENST00000428233 350 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 CALM2P4-201ENST00000430810 426 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 SNORA31.4-201ENST00000516049 129 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 AC090049.2-201ENST00000550377 109 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 AC012557.2-201ENST00000605919 418 ntBASIC0.93□□□□□ -2.26
RPAP1Q9BWH6 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.3-201ENST00000362331 103 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU4-40P-201ENST00000364351 143 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 Y_RNA.267-201ENST00000364679 109 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU4-12P-201ENST00000365233 139 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU6-1145P-201ENST00000384246 107 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU6-424P-201ENST00000384367 105 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 MIR190B-201ENST00000401119 79 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 MIR936-201ENST00000401264 98 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU6-1001P-201ENST00000411265 100 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 AC018710.1-201ENST00000506509 158 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNA5SP20-201ENST00000515976 84 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU6-947P-201ENST00000516264 106 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU7-28P-201ENST00000516759 62 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 AC133485.1-201ENST00000567176 124 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 AC138907.6-201ENST00000568401 126 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 AC091178.2-201ENST00000584401 117 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 AC093913.1-201ENST00000614178 329 ntBASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.92□□□□□ -2.26
RPAP1Q9BWH6 RNU6-1264P-201ENST00000383891 107 ntBASIC0.91□□□□□ -2.26
RPAP1Q9BWH6 SNORD41-201ENST00000386967 70 ntBASIC0.91□□□□□ -2.26
RPAP1Q9BWH6 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.91□□□□□ -2.26
RPAP1Q9BWH6 AC091021.1-201ENST00000468051 388 ntBASIC0.91□□□□□ -2.26
RPAP1Q9BWH6 AC092989.1-201ENST00000481235 277 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms