Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL353149.1-201ENST00000610667 244 ntBASIC2.46□□□□□ -2.02
NUP88Q99567 CENPCP1-201ENST00000533085 2578 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 snoU2_19.2-201ENST00000363024 80 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 Y_RNA.124-201ENST00000363339 93 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 Y_RNA.287-201ENST00000364853 94 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 RNU6-290P-201ENST00000365212 101 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 RNU6-514P-201ENST00000384208 107 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 RNU6-505P-201ENST00000384427 107 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 Y_RNA.569-201ENST00000384749 103 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 MIR144-201ENST00000384886 86 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
NUP88Q99567 RNA5SP450-201ENST00000411206 102 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 CST2P1-201ENST00000425770 87 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 MTCYBP9-201ENST00000431021 303 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 AL591806.2-201ENST00000433122 173 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 AC011753.1-201ENST00000451001 220 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.45□□□□□ -2.02
NUP88Q99567 HMGN1P10-201ENST00000474557 553 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 TRBVB-201ENST00000477100 408 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 RNU6-436P-201ENST00000516171 114 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 RNU2-19P-201ENST00000517288 84 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.45□□□□□ -2.02
NUP88Q99567 AL359075.3-201ENST00000613288 217 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 MIR6895-201ENST00000613497 78 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 Y_RNA.783-201ENST00000613546 102 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 MIR8062-201ENST00000621515 85 ntBASIC2.45□□□□□ -2.02
NUP88Q99567 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
NUP88Q99567 Y_RNA.84-201ENST00000363011 104 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 RNU6-196P-201ENST00000384315 107 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 RNA5SP467-201ENST00000391274 118 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.44□□□□□ -2.02
NUP88Q99567 HSPE1P25-201ENST00000455484 251 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 RNA5SP57-201ENST00000459463 123 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 RNU1-142P-201ENST00000516682 145 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 AC069114.2-201ENST00000604699 304 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 U1.36-201ENST00000620684 176 ntBASIC2.44□□□□□ -2.02
NUP88Q99567 NAA50-211ENST00000630058 177 ntTSL 5 BASIC2.44□□□□□ -2.02
NUP88Q99567 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.44□□□□□ -2.02
NUP88Q99567 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
NUP88Q99567 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.43□□□□□ -2.02
NUP88Q99567 AL356292.1-201ENST00000283110 373 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 SNORA25.1-201ENST00000362326 128 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 SNORD81.1-201ENST00000363064 77 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 Y_RNA.376-201ENST00000365638 108 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 SNORA8-201ENST00000384574 139 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 Y_RNA.541-201ENST00000384640 113 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 MIR515-2-201ENST00000384883 83 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 MIR515-1-201ENST00000384884 83 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 RNA5SP501-201ENST00000410990 112 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 AC010154.1-201ENST00000425857 269 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 AL445646.1-201ENST00000431784 216 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 RPL23AP7-203ENST00000449021 469 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 AC055731.1-201ENST00000474387 401 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 RNA5SP82-201ENST00000516707 92 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 SCARNA24.2-201ENST00000516968 130 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.43□□□□□ -2.02
NUP88Q99567 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.43□□□□□ -2.02
NUP88Q99567 AL161670.1-201ENST00000554348 137 ntBASIC2.43□□□□□ -2.02
NUP88Q99567 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.43□□□□□ -2.02
NUP88Q99567 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
NUP88Q99567 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
NUP88Q99567 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.42□□□□□ -2.02
NUP88Q99567 RNA5SP276-201ENST00000362580 94 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 RNU6-376P-201ENST00000384731 106 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 RNU6-855P-201ENST00000410395 104 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 RPS26P55-201ENST00000471178 356 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 RNU6-1278P-201ENST00000516130 107 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 RNU7-172P-201ENST00000517125 64 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 AC005828.6-201ENST00000606610 232 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.42□□□□□ -2.02
NUP88Q99567 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
NUP88Q99567 Y_RNA.16-201ENST00000362421 102 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 RNU4-80P-201ENST00000363200 141 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 SNORA33-201ENST00000363664 130 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 RNU6-710P-201ENST00000410424 105 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.41□□□□□ -2.02
NUP88Q99567 AC099677.2-201ENST00000436385 175 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.41□□□□□ -2.02
NUP88Q99567 RNVU1-2-201ENST00000516326 135 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 RNU2-31P-201ENST00000516954 155 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 DEFB108E-201ENST00000524692 240 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 RPL21P9-201ENST00000556149 474 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 MIR4287-201ENST00000579398 78 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 SNRPGP19-201ENST00000603826 189 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 U6.73-201ENST00000619194 103 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 MIR203B-201ENST00000636080 86 ntBASIC2.41□□□□□ -2.02
NUP88Q99567 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.41□□□□□ -2.02
NUP88Q99567 Y_RNA.144-201ENST00000363521 113 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 RNA5SP99-201ENST00000364020 114 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 Y_RNA.396-201ENST00000383949 103 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 AL117342.1-201ENST00000404861 406 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 RNU6-1203P-201ENST00000410703 110 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 AC097462.1-201ENST00000514125 324 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 AL512605.2-201ENST00000592972 256 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 AC127459.3-201ENST00000624328 466 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 AC022513.1-201ENST00000624512 117 ntBASIC2.4□□□□□ -2.03
NUP88Q99567 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
NUP88Q99567 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
NUP88Q99567 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 181 ms