Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SNORA48.1-201ENST00000390879 135 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 AL117342.1-201ENST00000404861 406 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 MIR548F4-201ENST00000408515 105 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 RNU6-121P-201ENST00000410525 99 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 AC010154.1-201ENST00000425857 269 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 snoU13.15-201ENST00000459407 104 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 HMGB3P17-201ENST00000504195 649 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 RNA5SP20-201ENST00000515976 84 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 AL359075.3-201ENST00000613288 217 ntBASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.49□□□□□ -2.01
CHMP4CQ96CF2 SNORD114-7-201ENST00000362520 77 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 Y_RNA.574-201ENST00000384766 95 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 RNU6-1186P-201ENST00000410429 97 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC096920.1-201ENST00000423991 241 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC024067.1-201ENST00000426199 223 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC099677.2-201ENST00000436385 175 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 RPL23AP7-203ENST00000449021 469 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC010409.1-201ENST00000487382 476 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 RNU6-966P-201ENST00000516479 104 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 RNU1-142P-201ENST00000516682 145 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 MIR5002-201ENST00000584713 97 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC010615.1-201ENST00000594254 1764 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 AC092881.1-201ENST00000638218 2733 ntBASIC2.48□□□□□ -2.01
CHMP4CQ96CF2 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 RNU6-505P-201ENST00000384427 107 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 Y_RNA.581-201ENST00000391017 97 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 AL139156.1-201ENST00000412785 841 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 RPL21P38-201ENST00000418090 167 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 AL358176.2-201ENST00000425769 204 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 RNU6-436P-201ENST00000516171 114 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 RNVU1-2-201ENST00000516326 135 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 U6.73-201ENST00000619194 103 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 MIR7843-201ENST00000622274 79 ntBASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.47□□□□□ -2.01
CHMP4CQ96CF2 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.26-201ENST00000362539 101 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 RNA5SP276-201ENST00000362580 94 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.124-201ENST00000363339 93 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 SNORA16B-201ENST00000364674 135 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.286-201ENST00000364813 102 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.329-201ENST00000365209 107 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 RNU6-102P-201ENST00000384485 104 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 RNU6-1105P-201ENST00000384774 107 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 RNA5SP467-201ENST00000391274 118 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 RN7SKP192-201ENST00000411291 327 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 AC098869.1-201ENST00000481627 292 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 RNU6-496P-201ENST00000516145 99 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 AC024995.1-201ENST00000523014 93 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 MIR4287-201ENST00000579398 78 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 U6.104-201ENST00000637979 90 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 ZNF702P-202ENST00000434269 1966 ntBASIC2.46□□□□□ -2.02
CHMP4CQ96CF2 AC008555.8-201ENST00000623602 2168 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 RNU6-1019P-201ENST00000364424 107 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 RNU6-290P-201ENST00000365212 101 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.383-201ENST00000383855 97 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 SNORA8-201ENST00000384574 139 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 MIR764-201ENST00000390811 85 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 RPS26P55-201ENST00000471178 356 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 AC097462.1-201ENST00000514125 324 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 AC002984.1-201ENST00000591692 448 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 AC037487.3-201ENST00000606668 112 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.45□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.47-201ENST00000362697 108 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 SNORD81.1-201ENST00000363064 77 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 SNORA33-201ENST00000363664 130 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.222-201ENST00000364264 102 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.361-201ENST00000365515 120 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 SNORA53-201ENST00000391141 249 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 RNU11-5P-201ENST00000391216 129 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 RNU6-710P-201ENST00000410424 105 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 AC069257.2-201ENST00000441819 155 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 AL021397.1-201ENST00000451806 248 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 HSPE1P25-201ENST00000455484 251 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 RNA5SP57-201ENST00000459463 123 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 RNU6-1278P-201ENST00000516130 107 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 RNU6-570P-201ENST00000517051 105 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 RNU7-172P-201ENST00000517125 64 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 IGKV3-31-201ENST00000523109 329 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 RPL21P9-201ENST00000556149 474 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 MIR219B-201ENST00000637023 88 ntBASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.44□□□□□ -2.02
CHMP4CQ96CF2 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.43□□□□□ -2.02
CHMP4CQ96CF2 SNORD114-1-201ENST00000362705 72 ntBASIC2.43□□□□□ -2.02
CHMP4CQ96CF2 snoU2_19.2-201ENST00000363024 80 ntBASIC2.43□□□□□ -2.02
CHMP4CQ96CF2 RNU1-22P-201ENST00000363334 158 ntBASIC2.43□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.512-201ENST00000384518 102 ntBASIC2.43□□□□□ -2.02
CHMP4CQ96CF2 Y_RNA.569-201ENST00000384749 103 ntBASIC2.43□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 110.3 ms