Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC036111.3-201ENST00000526389 112 ntBASIC0.26□□□□□ -2.37
CCDC112Q8NEF3 AC026371.1-201ENST00000551867 419 ntBASIC0.26□□□□□ -2.37
CCDC112Q8NEF3 AC011195.1-201ENST00000578177 177 ntBASIC0.26□□□□□ -2.37
CCDC112Q8NEF3 MIR5093-201ENST00000583199 100 ntBASIC0.26□□□□□ -2.37
CCDC112Q8NEF3 PIGPP4-201ENST00000584447 307 ntBASIC0.26□□□□□ -2.37
CCDC112Q8NEF3 AL138726.1-201ENST00000614873 333 ntBASIC0.26□□□□□ -2.37
CCDC112Q8NEF3 Y_RNA.30-201ENST00000362572 97 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 RNA5SP257-201ENST00000363023 116 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 SNORA25.3-201ENST00000363205 127 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 Y_RNA.169-201ENST00000363745 96 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 Y_RNA.179-201ENST00000363844 90 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 RNU6-280P-201ENST00000364145 104 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 RNA5SP63-201ENST00000391225 112 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 EIF4E2P1-201ENST00000393781 255 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 CALM2P3-201ENST00000400429 449 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 MTCO2P30-201ENST00000503662 364 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 AC091885.1-201ENST00000506658 268 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 RN7SKP164-201ENST00000516138 266 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 AC010620.1-201ENST00000601088 1102 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 RNU6-94P-201ENST00000607728 107 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 AL603755.1-201ENST00000619504 163 ntBASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.25□□□□□ -2.37
CCDC112Q8NEF3 RNU4-67P-201ENST00000364569 141 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 Y_RNA.374-201ENST00000365606 101 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 RNY1P8-201ENST00000383970 114 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 RPL30P16-201ENST00000419341 429 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 ZNF885P-201ENST00000420174 1098 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 RNU6-261P-201ENST00000459506 102 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 RNU7-41P-201ENST00000515917 61 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 AL358944.1-201ENST00000528537 144 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 AC027279.3-201ENST00000625055 122 ntBASIC0.24□□□□□ -2.37
CCDC112Q8NEF3 Y_RNA.151-201ENST00000363566 112 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 RNU6-1297P-201ENST00000384415 104 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 RNU6-541P-201ENST00000384709 110 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 SNORD37.1-201ENST00000390968 65 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 RNA5SP222-201ENST00000411039 105 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC018865.2-201ENST00000423631 129 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC018710.1-201ENST00000506509 158 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 RNA5SP20-201ENST00000515976 84 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 RN7SKP287-201ENST00000516546 266 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AF235103.2-201ENST00000525753 346 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC093424.1-201ENST00000604999 338 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC007684.1-201ENST00000609671 477 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC091931.1-201ENST00000623488 728 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 AC100810.6-201ENST00000638068 285 ntBASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
CCDC112Q8NEF3 Y_RNA.1-201ENST00000352915 104 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 MIRLET7D-201ENST00000362263 87 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 SNORA27.1-201ENST00000362604 124 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 RNU5F-3P-201ENST00000363767 117 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 RNU6-117P-201ENST00000365415 107 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 MIR514A2-201ENST00000385131 88 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 MIR514A3-201ENST00000385132 88 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 SNORD111-201ENST00000408139 94 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 MTND3P16-201ENST00000452205 344 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 CYCTP-201ENST00000504253 315 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 AP003327.1-201ENST00000529684 127 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 MTATP6P24-201ENST00000576835 677 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 AC120024.3-201ENST00000603167 156 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 AC010999.1-201ENST00000611856 324 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 AL136317.1-201ENST00000612653 226 ntBASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.22□□□□□ -2.37
CCDC112Q8NEF3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 AC073544.1-201ENST00000600110 1595 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 RNU6-254P-201ENST00000363377 107 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 RNU6-522P-201ENST00000364497 107 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 SNORA36.2-201ENST00000384004 127 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 RNU6-790P-201ENST00000384479 105 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 RNU6-376P-201ENST00000384731 106 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 SNORD105-201ENST00000386910 85 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 MIR1827-201ENST00000408549 66 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 MIR1298-201ENST00000408783 112 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 RNU6-177P-201ENST00000411257 104 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 PIGPP3-201ENST00000425307 415 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 AL137792.2-201ENST00000443484 235 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 MTND1P11-201ENST00000456661 876 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 RNU11-2P-201ENST00000516898 142 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 SNORA74.3-201ENST00000517108 154 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 AP001330.5-201ENST00000607176 411 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 AC024933.1-201ENST00000608472 348 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.21□□□□□ -2.38
CCDC112Q8NEF3 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 RNU6-407P-201ENST00000365280 104 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 SNORA69-201ENST00000383895 132 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 MIR520C-201ENST00000385005 87 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 RN7SKP142-201ENST00000411236 328 ntBASIC0.2□□□□□ -2.38
CCDC112Q8NEF3 PCMTD1P1-201ENST00000455560 355 ntBASIC0.2□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 122.1 ms