Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC068587.5-201ENST00000528506 175 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 AC026470.2-201ENST00000561492 181 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 AC097460.3-201ENST00000623099 442 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 MTCO3P8-201ENST00000453691 755 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC005178.1-201ENST00000508392 440 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 MIR2115-201ENST00000516657 100 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 RNU6-341P-201ENST00000516973 96 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC022616.3-201ENST00000523940 148 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 MIR544B-201ENST00000582372 78 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC245297.2-201ENST00000610119 565 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC112487.2-201ENST00000637950 304 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 MLLT10P1-201ENST00000418346 262 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC098592.1-201ENST00000419352 333 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC-0.61□□□□□ -2.51
USF3Q68DE3 MTND1P26-201ENST00000440488 538 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 EPS15P1-201ENST00000448836 336 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC107297.1-201ENST00000459991 176 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC010486.3-201ENST00000511602 785 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 AC010493.1-201ENST00000513479 292 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 MIR7107-201ENST00000611489 80 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 SNORA43.4-201ENST00000629559 138 ntBASIC-0.61□□□□□ -2.51
USF3Q68DE3 RNU6-61P-201ENST00000365528 109 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 SNORA36A-201ENST00000384221 132 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 Y_RNA.480-201ENST00000384364 102 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 MIR873-201ENST00000401120 77 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 RNU6-387P-201ENST00000411331 105 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC069271.1-201ENST00000445577 156 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 RNU7-185P-201ENST00000459215 60 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-0.62□□□□□ -2.51
USF3Q68DE3 RNU6-475P-201ENST00000516073 104 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC-0.62□□□□□ -2.51
USF3Q68DE3 MIR4677-201ENST00000584153 80 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC125232.2-201ENST00000592457 143 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC018462.2-201ENST00000605375 395 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 uc_338.4-201ENST00000616635 176 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 RNA5SP117-201ENST00000365294 118 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 RNU6-652P-201ENST00000365488 107 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 RNU6-723P-201ENST00000383973 107 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 MIR125B2-201ENST00000385128 89 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 MIR601-201ENST00000385256 79 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC244250.2-201ENST00000418731 148 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC015818.7-201ENST00000428754 109 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AL358934.1-201ENST00000432346 324 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC004386.2-201ENST00000441858 148 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC087499.7-201ENST00000441958 109 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 MTND4P18-201ENST00000447010 465 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 U8.21-201ENST00000459536 136 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC012433.1-201ENST00000588916 398 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 AC022306.3-201ENST00000619930 550 ntBASIC-0.62□□□□□ -2.51
USF3Q68DE3 RNU4-21P-201ENST00000362802 126 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 RNU5B-2P-201ENST00000363036 113 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 SNORA25.7-201ENST00000364375 127 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 RNU6-726P-201ENST00000364680 107 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 Y_RNA.370-201ENST00000365589 108 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 AC114491.1-201ENST00000416095 246 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-0.63□□□□□ -2.51
USF3Q68DE3 USP9YP25-201ENST00000457708 443 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 SNORD65B-201ENST00000459126 73 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 RNU6-430P-201ENST00000517078 107 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 RNU7-156P-201ENST00000517214 74 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 AP001328.1-201ENST00000528550 176 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC-0.63□□□□□ -2.51
USF3Q68DE3 MIR378D2-201ENST00000580636 98 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 MIR4762-201ENST00000585261 75 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 AC008521.1-201ENST00000587471 187 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 AC005562.2-201ENST00000618264 111 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 SNORD38B-202ENST00000625943 69 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 AC106754.1-201ENST00000562632 1513 ntBASIC-0.63□□□□□ -2.51
USF3Q68DE3 MIR587-201ENST00000384845 96 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-1106P-201ENST00000390845 107 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-447P-201ENST00000410293 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-1118P-201ENST00000410382 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-1076P-201ENST00000410397 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-355P-201ENST00000410427 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-791P-201ENST00000410467 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-705P-201ENST00000410601 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-1100P-201ENST00000410691 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-860P-201ENST00000410860 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-1217P-201ENST00000411276 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-785P-201ENST00000411324 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 POLR2KP2-201ENST00000438155 177 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 snoU13.2-201ENST00000459201 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-469P-201ENST00000516253 101 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 HIF1AP1-201ENST00000553642 175 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 MIR3925-201ENST00000584674 77 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 MIR4639-201ENST00000584938 69 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 U6.90-201ENST00000614007 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 U6.70-201ENST00000620287 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 Y_RNA.517-201ENST00000384551 106 ntBASIC-0.64□□□□□ -2.51
USF3Q68DE3 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-0.64□□□□□ -2.51
USF3Q68DE3 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC-0.64□□□□□ -2.51
USF3Q68DE3 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC-0.64□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms