Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.101-201ENST00000363154 102 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU6-457P-201ENST00000363999 107 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU4-50P-201ENST00000364361 141 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU6-937P-201ENST00000384325 106 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU6-823P-201ENST00000391042 103 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU4-30P-201ENST00000410245 143 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 AP1B1P2-201ENST00000416196 106 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 SDAD1P3-201ENST00000427380 333 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 AC010409.1-201ENST00000487382 476 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1146P-201ENST00000516282 102 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNA5SP220-201ENST00000516298 104 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU6-155P-201ENST00000516347 100 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 SNORA44.1-201ENST00000517031 108 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1137P-201ENST00000517073 99 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 BX248123.2-201ENST00000606318 124 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.772-201ENST00000606692 102 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 uc_338.20-201ENST00000621563 178 ntBASIC1.68□□□□□ -2.14
PDLIM3Q53GG5 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNA5SP160-201ENST00000364866 120 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1227P-201ENST00000383981 107 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.439-201ENST00000384119 94 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1310P-201ENST00000384153 107 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 SNORA20B-201ENST00000384220 132 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1011P-201ENST00000384668 107 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 AL355796.1-201ENST00000406706 323 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 MIR1276-201ENST00000408707 83 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNU2-7P-201ENST00000410794 178 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RPEP5-201ENST00000441137 268 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 U8.20-201ENST00000459445 131 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNU6-966P-201ENST00000516479 104 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1046P-201ENST00000516538 107 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 RNU7-110P-201ENST00000516891 62 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 MIR3935-201ENST00000583472 104 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 PART1_1.1-201ENST00000611761 217 ntBASIC1.67□□□□□ -2.14
PDLIM3Q53GG5 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 RNU6-1175P-201ENST00000365200 107 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.526-201ENST00000384572 110 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 RNU6-136P-201ENST00000384663 107 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 SNORA48.1-201ENST00000390879 135 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 AL023284.1-201ENST00000403956 276 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 AL117342.1-201ENST00000404861 406 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 RNU6-130P-201ENST00000411112 103 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 AC009310.1-201ENST00000414414 451 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 AC008834.1-201ENST00000511612 175 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 Y_RNA.715-201ENST00000517082 110 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 MIR3198-2-201ENST00000577868 80 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 MIR4680-201ENST00000580906 66 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 MIR4438-201ENST00000585271 93 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 AC006380.1-201ENST00000603598 186 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 AC069114.2-201ENST00000604699 304 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 AL121655.1-201ENST00000605811 308 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 RMST_2.1-201ENST00000617263 136 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 U6.115-201ENST00000636045 103 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 ZNF355P-201ENST00000427301 3216 ntBASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
PDLIM3Q53GG5 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.14
PDLIM3Q53GG5 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
PDLIM3Q53GG5 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.124-201ENST00000363339 93 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 SNORA63-201ENST00000363450 132 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 RNU4-76P-201ENST00000364509 141 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 SNORA33.2-201ENST00000365413 134 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 SUMO2P12-201ENST00000405924 140 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 MTCYBP6-201ENST00000441810 138 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 RNU6-475P-201ENST00000516073 104 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 AC084364.2-201ENST00000546924 395 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 AC012493.3-201ENST00000604494 112 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
PDLIM3Q53GG5 AC010615.1-201ENST00000594254 1764 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 RNU6-661P-201ENST00000362409 107 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.191-201ENST00000363972 113 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 RNU6-639P-201ENST00000384074 107 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.446-201ENST00000384178 104 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.455-201ENST00000384230 98 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 MRPL35P1-201ENST00000404272 572 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 Y_RNA.602-201ENST00000410535 92 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 AC113618.1-201ENST00000416747 285 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 CST2P1-201ENST00000425770 87 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 HSPE1P21-201ENST00000438283 308 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 AC010598.1-201ENST00000510378 103 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 RNA5SP182-201ENST00000516064 82 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 RNY3P15-201ENST00000516297 97 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 RNU1-142P-201ENST00000516682 145 ntBASIC1.64□□□□□ -2.15
PDLIM3Q53GG5 SNORA31.17-201ENST00000516953 127 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms