Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.92□□□□□ -2.1
COL28A1Q2UY09 AC005034.5-201ENST00000604219 466 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 AC016925.2-201ENST00000605108 242 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.92□□□□□ -2.1
COL28A1Q2UY09 AL773524.1-201ENST00000614065 229 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 MIR6779-201ENST00000617283 64 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 AL162373.1-201ENST00000620433 407 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 SDR42E1P4-201ENST00000620894 481 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 MIR6734-201ENST00000621166 68 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 U6.115-201ENST00000636045 103 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
COL28A1Q2UY09 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.92□□□□□ -2.1
COL28A1Q2UY09 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.92□□□□□ -2.1
COL28A1Q2UY09 CENPCP1-201ENST00000533085 2578 ntBASIC1.92□□□□□ -2.1
COL28A1Q2UY09 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
COL28A1Q2UY09 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.439-201ENST00000384119 94 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.471-201ENST00000384312 102 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.570-201ENST00000384750 101 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AL078595.1-201ENST00000404458 226 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 MIR1252-201ENST00000408861 65 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 RNU2-54P-201ENST00000410299 190 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 RNU6-101P-201ENST00000410323 104 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 RNA5SP100-201ENST00000410903 110 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 RNA5SP59-201ENST00000410922 110 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 RNU5A-5P-201ENST00000411054 116 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC005002.2-201ENST00000438228 269 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AL021397.1-201ENST00000451806 248 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.91□□□□□ -2.1
COL28A1Q2UY09 MIR514B-201ENST00000516774 80 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 Y_RNA.715-201ENST00000517082 110 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC055872.1-201ENST00000570978 278 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 MIR5094-201ENST00000578766 85 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC008749.1-201ENST00000597650 306 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC124312.5-201ENST00000604451 268 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC010900.2-201ENST00000604508 210 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.91□□□□□ -2.1
COL28A1Q2UY09 U6.73-201ENST00000619194 103 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 AC091932.3-201ENST00000624223 323 ntBASIC1.91□□□□□ -2.1
COL28A1Q2UY09 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
COL28A1Q2UY09 RNU6-271P-201ENST00000363858 105 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.422-201ENST00000384054 114 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 SNORA20B-201ENST00000384220 132 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 RNU6-417P-201ENST00000384712 107 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AL355796.1-201ENST00000406706 323 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AC244636.1-201ENST00000421152 228 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AC245047.4-201ENST00000433189 144 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AC069257.2-201ENST00000441819 155 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AC022254.1-201ENST00000567857 235 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 MIR4287-201ENST00000579398 78 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.9□□□□□ -2.11
COL28A1Q2UY09 MIR4680-201ENST00000580906 66 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.9□□□□□ -2.11
COL28A1Q2UY09 MIR5002-201ENST00000584713 97 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AL078603.1-201ENST00000603824 313 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 AC022441.3-201ENST00000605737 136 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 PART1_1.1-201ENST00000611761 217 ntBASIC1.9□□□□□ -2.11
COL28A1Q2UY09 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.89□□□□□ -2.11
COL28A1Q2UY09 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC1.89□□□□□ -2.11
COL28A1Q2UY09 RNA5SP276-201ENST00000362580 94 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 SNORD115-30-201ENST00000364117 82 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 RNY1-201ENST00000364228 113 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 RNU6-639P-201ENST00000384074 107 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.455-201ENST00000384230 98 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 MIR873-201ENST00000401120 77 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.89□□□□□ -2.11
COL28A1Q2UY09 MRPS10P1-201ENST00000448483 130 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 RPS26P45-201ENST00000471748 340 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 RN7SL274P-201ENST00000492268 272 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
COL28A1Q2UY09 DNAJC19P9-201ENST00000555084 351 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 AC006380.1-201ENST00000603598 186 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 AL359075.3-201ENST00000613288 217 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 RMST_2.1-201ENST00000617263 136 ntBASIC1.89□□□□□ -2.11
COL28A1Q2UY09 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
COL28A1Q2UY09 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
COL28A1Q2UY09 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.88□□□□□ -2.11
COL28A1Q2UY09 SNORA27.1-201ENST00000362604 124 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.101-201ENST00000363154 102 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 RNU6-112P-201ENST00000363599 104 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 SNORA63D-201ENST00000364359 132 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.276-201ENST00000364732 109 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.326-201ENST00000365176 113 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 Y_RNA.389-201ENST00000383924 113 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 SUMO2P12-201ENST00000405924 140 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 RNU6-130P-201ENST00000411112 103 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 AC010154.1-201ENST00000425857 269 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 AC073910.1-201ENST00000445047 438 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 MIR3683-201ENST00000580847 82 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 AL355297.3-201ENST00000604082 446 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 AL627230.6-201ENST00000611129 280 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 AL021879.1-201ENST00000611756 288 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 AC040896.1-201ENST00000613819 479 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 U6.108-201ENST00000637764 58 ntBASIC1.88□□□□□ -2.11
COL28A1Q2UY09 AC010615.1-201ENST00000594254 1764 ntBASIC1.87□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 143.2 ms