Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 Y_RNA.136-201ENST00000363444 102 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 RNU6-1019P-201ENST00000364424 107 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 Y_RNA.237-201ENST00000364439 102 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 Y_RNA.341-201ENST00000365341 102 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.83□□□□□ -1.96
SF3A1Q15459 RNU6-463P-201ENST00000384340 107 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 MIR27B-201ENST00000385129 97 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 RNU11-5P-201ENST00000391216 129 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 AL163195.1-201ENST00000496941 348 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 SERF1AP1-201ENST00000514575 187 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 RNA5SP320-201ENST00000516263 124 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 SNORA31.11-201ENST00000516528 139 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 AC084364.2-201ENST00000546924 395 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.83□□□□□ -1.96
SF3A1Q15459 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.83□□□□□ -1.96
SF3A1Q15459 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.83□□□□□ -1.96
SF3A1Q15459 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
SF3A1Q15459 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.82□□□□□ -1.96
SF3A1Q15459 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
SF3A1Q15459 RNU4-13P-201ENST00000364019 141 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 SNORD116-13-201ENST00000384408 92 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 RNU6-136P-201ENST00000384663 107 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 RNU2-7P-201ENST00000410794 178 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 AC069257.2-201ENST00000441819 155 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 RNU7-128P-201ENST00000517247 62 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 IGLV3-17-201ENST00000519099 244 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 MIR4503-201ENST00000582187 83 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 MIR3149-201ENST00000584629 83 ntBASIC2.82□□□□□ -1.96
SF3A1Q15459 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.82□□□□□ -1.96
SF3A1Q15459 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC2.82□□□□□ -1.96
SF3A1Q15459 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
SF3A1Q15459 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.81□□□□□ -1.96
SF3A1Q15459 AL513328.1-201ENST00000446460 224 ntBASIC2.81□□□□□ -1.96
SF3A1Q15459 RNU6-191P-201ENST00000516295 94 ntBASIC2.81□□□□□ -1.96
SF3A1Q15459 U6.108-201ENST00000637764 58 ntBASIC2.81□□□□□ -1.96
SF3A1Q15459 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.81□□□□□ -1.96
SF3A1Q15459 AC007336.1-201ENST00000576365 3828 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
SF3A1Q15459 RNU6-702P-201ENST00000364982 107 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 MIR518C-201ENST00000384822 101 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 AL512604.1-201ENST00000404812 257 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 AL355497.1-201ENST00000406262 551 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 RNU2-38P-201ENST00000410856 79 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC2.8□□□□□ -1.96
SF3A1Q15459 AC245047.4-201ENST00000433189 144 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 AC091959.1-201ENST00000495857 238 ntBASIC2.8□□□□□ -1.96
SF3A1Q15459 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.8□□□□□ -1.96
SF3A1Q15459 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.8□□□□□ -1.96
SF3A1Q15459 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
SF3A1Q15459 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.8□□□□□ -1.96
SF3A1Q15459 Y_RNA.172-201ENST00000363765 102 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 RNU6-117P-201ENST00000365415 107 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 SNORA6-201ENST00000384033 151 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 Y_RNA.452-201ENST00000384202 108 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 MIR520A-201ENST00000384862 85 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 MIR1261-201ENST00000408659 82 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 HSPE1P21-201ENST00000438283 308 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC2.79□□□□□ -1.96
SF3A1Q15459 SUB1P4-201ENST00000566062 339 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 MIR6895-201ENST00000613497 78 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 U4.3-201ENST00000621047 82 ntBASIC2.79□□□□□ -1.96
SF3A1Q15459 TTK-211ENST00000627129 240 ntTSL 5 BASIC2.79□□□□□ -1.96
SF3A1Q15459 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.78□□□□□ -1.96
SF3A1Q15459 MIR21-201ENST00000362134 72 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 SNORD114-30-201ENST00000364448 72 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 Y_RNA.456-201ENST00000384232 111 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 AL158823.1-201ENST00000418441 478 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.78□□□□□ -1.96
SF3A1Q15459 RPS20P10-201ENST00000451209 253 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 RPS26P45-201ENST00000471748 340 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 AC091544.4-201ENST00000555268 342 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.78□□□□□ -1.96
SF3A1Q15459 AC004832.4-201ENST00000608952 331 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
SF3A1Q15459 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
SF3A1Q15459 AC008555.8-201ENST00000623602 2168 ntBASIC2.78□□□□□ -1.96
SF3A1Q15459 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.77□□□□□ -1.97
SF3A1Q15459 AC018630.2-201ENST00000534866 2403 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 MIR144-201ENST00000384886 86 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 MIR17-201ENST00000385012 84 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 RNA5SP511-201ENST00000410487 115 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 RNU7-94P-201ENST00000459576 63 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 AC091021.1-201ENST00000468051 388 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.77□□□□□ -1.97
SF3A1Q15459 MIR6079-201ENST00000635807 62 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 AC068647.2-201ENST00000637380 353 ntBASIC2.77□□□□□ -1.97
SF3A1Q15459 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
SF3A1Q15459 MIR335-201ENST00000362173 94 ntBASIC2.76□□□□□ -1.97
SF3A1Q15459 RNU6-112P-201ENST00000363599 104 ntBASIC2.76□□□□□ -1.97
SF3A1Q15459 RNA5SP68-201ENST00000363885 119 ntBASIC2.76□□□□□ -1.97
SF3A1Q15459 Y_RNA.267-201ENST00000364679 109 ntBASIC2.76□□□□□ -1.97
SF3A1Q15459 Y_RNA.368-201ENST00000365547 113 ntBASIC2.76□□□□□ -1.97
SF3A1Q15459 RNA5SP109-201ENST00000391010 116 ntBASIC2.76□□□□□ -1.97
SF3A1Q15459 AC015720.1-201ENST00000565251 277 ntBASIC2.76□□□□□ -1.97
SF3A1Q15459 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.76□□□□□ -1.97
SF3A1Q15459 RNU6-662P-201ENST00000384253 104 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 AL359511.1-201ENST00000402970 211 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 RNA5SP100-201ENST00000410903 110 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 RNA5SP59-201ENST00000410922 110 ntBASIC2.75□□□□□ -1.97
SF3A1Q15459 AC245047.3-201ENST00000429428 127 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms