Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 Y_RNA.398-201ENST00000383952 99 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 Y_RNA.412-201ENST00000384001 104 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 MIR1262-201ENST00000408276 93 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 SNORA36B-201ENST00000410438 131 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 RNA5SP21-201ENST00000410917 96 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 AC009238.1-201ENST00000442165 424 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 UBBP3-201ENST00000445497 241 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 AC104389.3-201ENST00000445629 235 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 AC009237.6-201ENST00000446969 424 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 AC091021.1-201ENST00000468051 388 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 RPS27AP9-201ENST00000477681 438 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXA4Q00056 RNA5SP76-201ENST00000516277 87 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 RNU6-56P-201ENST00000516986 93 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.24□□□□□ -2.05
HOXA4Q00056 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.24□□□□□ -2.05
HOXA4Q00056 AL449363.1-201ENST00000617815 186 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 AC006435.5-201ENST00000624486 112 ntBASIC2.24□□□□□ -2.05
HOXA4Q00056 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.24□□□□□ -2.05
HOXA4Q00056 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
HOXA4Q00056 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
HOXA4Q00056 CENPCP1-201ENST00000533085 2578 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 AC062016.1-201ENST00000355719 319 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
HOXA4Q00056 MIR26A1-201ENST00000362205 77 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 Y_RNA.121-201ENST00000363309 113 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 RNU1-22P-201ENST00000363334 158 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 RNU6-1130P-201ENST00000365434 107 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXA4Q00056 RNU6-1323P-201ENST00000384025 107 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
HOXA4Q00056 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA4Q00056 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.23□□□□□ -2.05
HOXA4Q00056 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA4Q00056 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.23□□□□□ -2.05
HOXA4Q00056 AC015720.1-201ENST00000565251 277 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 MIR3144-201ENST00000579460 79 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXA4Q00056 MIR3605-201ENST00000583214 100 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 MIR4438-201ENST00000585271 93 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 AP003357.1-201ENST00000604497 148 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 MIR6733-201ENST00000635723 61 ntBASIC2.23□□□□□ -2.05
HOXA4Q00056 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.23□□□□□ -2.05
HOXA4Q00056 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
HOXA4Q00056 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
HOXA4Q00056 RNU6-144P-201ENST00000383951 107 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 RNU6-1072P-201ENST00000384703 107 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 RNU6-417P-201ENST00000384712 107 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 RNU6-443P-201ENST00000384780 107 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 MT-TT-201ENST00000387460 66 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 MIR526A2-201ENST00000390198 65 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 MIR1253-201ENST00000408273 105 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 SRIP3-201ENST00000413200 219 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 AL135786.1-201ENST00000415892 214 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 AL162725.1-201ENST00000435405 301 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 AL109933.2-201ENST00000452651 260 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 AC245047.8-201ENST00000456455 284 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 RPL36AP21-201ENST00000490372 323 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXA4Q00056 AC011406.1-201ENST00000512440 370 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 Y_RNA.797-201ENST00000515977 94 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 RNU6-1041P-201ENST00000516254 102 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 RN7SKP282-201ENST00000516824 299 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 NDUFA5P6-201ENST00000542110 379 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.22□□□□□ -2.05
HOXA4Q00056 U6.73-201ENST00000619194 103 ntBASIC2.22□□□□□ -2.05
HOXA4Q00056 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.22□□□□□ -2.05
HOXA4Q00056 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
HOXA4Q00056 Y_RNA.75-201ENST00000362927 97 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 Y_RNA.441-201ENST00000384123 112 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 MIR23A-201ENST00000385245 73 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.21□□□□□ -2.06
HOXA4Q00056 HMGN2P34-201ENST00000437647 269 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 RN7SL297P-201ENST00000483161 293 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 AC097462.1-201ENST00000514125 324 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 RNU7-200P-201ENST00000516105 62 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 RN7SKP164-201ENST00000516138 266 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 SNORA9.3-201ENST00000516383 129 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 RNU7-172P-201ENST00000517125 64 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 AC127455.1-201ENST00000565496 145 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 MIR4724-201ENST00000579485 89 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 MIR4744-201ENST00000581563 82 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 ELOCP29-201ENST00000588193 334 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 AC022202.1-201ENST00000613515 211 ntBASIC2.21□□□□□ -2.06
HOXA4Q00056 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
HOXA4Q00056 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXA4Q00056 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
HOXA4Q00056 RNU4-13P-201ENST00000364019 141 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 Y_RNA.229-201ENST00000364347 113 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 RNU6-312P-201ENST00000364629 107 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 RNU6-578P-201ENST00000390980 103 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 RNA5SP467-201ENST00000391274 118 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 MIR1278-201ENST00000408753 81 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 SEPT7P4-201ENST00000437076 306 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 RPL23AP54-201ENST00000495129 419 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 RNU6-1007P-201ENST00000516586 107 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 RNU6-789P-201ENST00000517105 102 ntBASIC2.2□□□□□ -2.06
HOXA4Q00056 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXA4Q00056 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXA4Q00056 AC108706.1-201ENST00000611053 297 ntBASIC2.2□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms