Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP003461.1-201ENST00000528866 78 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AL157687.1-201ENST00000554853 619 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC-0.17□□□□□ -2.44
FOXA3P55318 CLPTM1LP1-201ENST00000604519 484 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AC020891.4-201ENST00000605745 93 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AL357078.3-201ENST00000607528 618 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AL136370.1-201ENST00000608166 691 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AL591926.4-201ENST00000616895 298 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AC009248.2-201ENST00000619826 254 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 uc_338.16-201ENST00000621804 95 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AC098679.4-201ENST00000624241 654 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AC127459.3-201ENST00000624328 466 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 AC009161.2-201ENST00000624626 138 ntBASIC-0.17□□□□□ -2.44
FOXA3P55318 MIR330-201ENST00000362196 94 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 SNORA27.1-201ENST00000362604 124 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 SNORD50.1-201ENST00000362987 71 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 Y_RNA.148-201ENST00000363557 117 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 U8.7-201ENST00000364940 136 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 RNU6-396P-201ENST00000365369 105 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AC117470.1-201ENST00000381974 330 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 RNU6-517P-201ENST00000384362 110 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 MIR593-201ENST00000384856 100 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 MIR193B-201ENST00000384907 83 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 MIR643-201ENST00000385267 97 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 RNA5SP63-201ENST00000391225 112 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 PCNPP3-201ENST00000393579 471 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 FGFR1OP2P1-201ENST00000395943 500 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 MLLT10P1-201ENST00000418346 262 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AL358176.2-201ENST00000425769 204 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AL593851.1-201ENST00000426171 157 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AL137792.2-201ENST00000443484 235 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-0.18□□□□□ -2.44
FOXA3P55318 UBE2V1P12-201ENST00000503954 474 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 RNU6-1038P-201ENST00000516516 104 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AL358944.1-201ENST00000528537 144 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.18□□□□□ -2.44
FOXA3P55318 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.18□□□□□ -2.44
FOXA3P55318 CPDP1-201ENST00000579660 283 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 MIR4676-201ENST00000583078 72 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AC245014.2-201ENST00000603689 287 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AC246785.4-201ENST00000605374 287 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 AL121757.2-201ENST00000611223 313 ntBASIC-0.18□□□□□ -2.44
FOXA3P55318 SNORA9.1-201ENST00000362412 131 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 RNU6-1084P-201ENST00000362498 107 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 RNA5SP325-201ENST00000363756 130 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 SNORD45.3-201ENST00000363836 72 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 RNU6-933P-201ENST00000384424 107 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 MIR145-201ENST00000384967 88 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 MIR610-201ENST00000385139 96 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 SNORD28B-201ENST00000390993 75 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 RNA5SP496-201ENST00000391240 109 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-0.19□□□□□ -2.44
FOXA3P55318 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC-0.19□□□□□ -2.44
FOXA3P55318 AL033528.1-201ENST00000453780 140 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC-0.19□□□□□ -2.44
FOXA3P55318 TPTE2P5-203ENST00000458118 728 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.19□□□□□ -2.44
FOXA3P55318 SNORA18.6-201ENST00000516792 115 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC-0.19□□□□□ -2.44
FOXA3P55318 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC-0.19□□□□□ -2.44
FOXA3P55318 AL355375.2-201ENST00000574825 175 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 MIR3678-201ENST00000578455 94 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 MIR548AR-201ENST00000582191 57 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AC087683.1-201ENST00000591187 441 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AC016597.2-201ENST00000613256 341 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AP001506.1-201ENST00000615444 211 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 AC010608.3-201ENST00000625048 527 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.19□□□□□ -2.44
FOXA3P55318 AC068137.4-201ENST00000638485 296 ntBASIC-0.19□□□□□ -2.44
FOXA3P55318 RNU6-280P-201ENST00000364145 104 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 Y_RNA.796-201ENST00000364268 102 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 RNU4-9P-201ENST00000364951 139 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 Y_RNA.799-201ENST00000364992 102 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 RNU6-117P-201ENST00000365415 107 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 Y_RNA.376-201ENST00000365638 108 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 RNY3P9-201ENST00000384727 106 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 MIR15B-201ENST00000385045 98 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 MIR153-2-201ENST00000385225 87 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 MIR644A-201ENST00000385262 94 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 RNU6-159P-201ENST00000391080 106 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 MTCYBP4-201ENST00000401524 249 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 MTCO2P33-201ENST00000402100 465 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 AL606923.1-201ENST00000406616 190 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 RNU2-54P-201ENST00000410299 190 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 RNU2-59P-201ENST00000410482 191 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC-0.2□□□□□ -2.44
FOXA3P55318 AC133104.1-201ENST00000429100 218 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC-0.2□□□□□ -2.44
FOXA3P55318 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-0.2□□□□□ -2.44
FOXA3P55318 RNU6-189P-201ENST00000516120 101 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 SNORD45.4-201ENST00000516629 73 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-0.2□□□□□ -2.44
FOXA3P55318 MTND2P38-201ENST00000522536 667 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC-0.2□□□□□ -2.44
FOXA3P55318 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC-0.2□□□□□ -2.44
FOXA3P55318 MIR5692C1-201ENST00000585309 91 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 AF250324.2-201ENST00000608299 610 ntBASIC-0.2□□□□□ -2.44
FOXA3P55318 5S_rRNA.13-201ENST00000622298 123 ntBASIC-0.2□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 102.5 ms