Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC-0.22□□□□□ -2.44
NUP98P52948 LINC00363-201ENST00000443228 210 ntTSL 5 BASIC-0.22□□□□□ -2.44
NUP98P52948 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC-0.22□□□□□ -2.44
NUP98P52948 MTND1P5-201ENST00000517906 940 ntBASIC-0.22□□□□□ -2.44
NUP98P52948 MIR548AX-201ENST00000580117 73 ntBASIC-0.22□□□□□ -2.44
NUP98P52948 AP000811.1-201ENST00000603803 651 ntBASIC-0.22□□□□□ -2.44
NUP98P52948 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC-0.22□□□□□ -2.44
NUP98P52948 MIR7844-201ENST00000616161 122 ntBASIC-0.22□□□□□ -2.44
NUP98P52948 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC-0.22□□□□□ -2.44
NUP98P52948 RNU5F-7P-201ENST00000363696 115 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 RNU4-9P-201ENST00000364951 139 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 MIR452-201ENST00000385020 85 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 MTCYBP4-201ENST00000401524 249 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 RNU2-59P-201ENST00000410482 191 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 AL353997.1-201ENST00000432936 108 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 RNU7-167P-201ENST00000459160 62 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 AC005920.2-201ENST00000509833 332 ntTSL 3 BASIC-0.22□□□□□ -2.45
NUP98P52948 RNA5SP20-201ENST00000515976 84 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 ELOCP32-201ENST00000548625 324 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 MTND4P33-201ENST00000556706 766 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 MIR8076-201ENST00000611401 83 ntBASIC-0.22□□□□□ -2.45
NUP98P52948 RNU6-654P-201ENST00000364373 107 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 AL049545.1-201ENST00000401856 572 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-0.23□□□□□ -2.45
NUP98P52948 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC-0.23□□□□□ -2.45
NUP98P52948 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-0.23□□□□□ -2.45
NUP98P52948 AL033528.1-201ENST00000453780 140 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 MTND2P31-201ENST00000512602 616 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 RNU6-1116P-201ENST00000517269 99 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 MIR3612-201ENST00000579753 87 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 AC064836.2-201ENST00000609491 462 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC-0.23□□□□□ -2.45
NUP98P52948 SCARNA4-201ENST00000629045 128 ntBASIC-0.23□□□□□ -2.45
NUP98P52948 RNU6-369P-201ENST00000362515 102 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 Y_RNA.123-201ENST00000363338 102 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 Y_RNA.168-201ENST00000363740 102 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 RNU5F-3P-201ENST00000363767 117 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 RNY4P34-201ENST00000364779 95 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 MT-TQ-201ENST00000387372 72 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 MT-TN-201ENST00000387400 73 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AL355143.1-201ENST00000407101 841 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AC243428.1-201ENST00000421099 264 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AC010598.1-201ENST00000510378 103 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC-0.24□□□□□ -2.45
NUP98P52948 AC120024.3-201ENST00000603167 156 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AC006566.1-201ENST00000608943 513 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AC009161.2-201ENST00000624626 138 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 RNU6-727P-201ENST00000363592 107 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 SNORA32.1-201ENST00000364514 115 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 RNA5SP517-201ENST00000364724 117 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AC117470.1-201ENST00000381974 330 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 RNU6-933P-201ENST00000384424 107 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 MTND1P26-201ENST00000440488 538 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 USP9YP12-201ENST00000450481 570 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.24□□□□□ -2.45
NUP98P52948 RNU4-49P-201ENST00000516080 140 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 SNORD27.1-201ENST00000516319 72 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 HIF1AP1-201ENST00000553642 175 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 AL008636.1-201ENST00000625038 1018 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 Clostridiales-1.4-201ENST00000636807 150 ntBASIC-0.24□□□□□ -2.45
NUP98P52948 Y_RNA.179-201ENST00000363844 90 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 RNU6-580P-201ENST00000365159 107 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC-0.25□□□□□ -2.45
NUP98P52948 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-0.25□□□□□ -2.45
NUP98P52948 AC114811.1-201ENST00000507207 168 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 SCOCP1-201ENST00000554676 349 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 AL157687.1-201ENST00000554853 619 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 AL355375.2-201ENST00000574825 175 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 SNORA25.18-201ENST00000607153 114 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 AC091304.9-201ENST00000612091 226 ntBASIC-0.25□□□□□ -2.45
NUP98P52948 RNU6-873P-201ENST00000363833 107 ntBASIC-0.26□□□□□ -2.45
NUP98P52948 RNU6-407P-201ENST00000365280 104 ntBASIC-0.26□□□□□ -2.45
NUP98P52948 RNU6-46P-201ENST00000383860 107 ntBASIC-0.26□□□□□ -2.45
NUP98P52948 RNU6-364P-201ENST00000384387 107 ntBASIC-0.26□□□□□ -2.45
NUP98P52948 MIR516B2-201ENST00000385190 85 ntBASIC-0.26□□□□□ -2.45
NUP98P52948 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-0.26□□□□□ -2.45
NUP98P52948 MTND1P8-201ENST00000571424 950 ntBASIC-0.26□□□□□ -2.45
NUP98P52948 AP000240.1-201ENST00000609910 452 ntBASIC-0.26□□□□□ -2.45
NUP98P52948 SNORA75.6-201ENST00000391318 127 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 RNU6-195P-201ENST00000411352 109 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC-0.27□□□□□ -2.45
NUP98P52948 AC009961.2-201ENST00000435771 251 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.27□□□□□ -2.45
NUP98P52948 snoU13.11-201ENST00000459219 104 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 MTND4P7-201ENST00000523876 130 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 AK6P2-201ENST00000549020 471 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC-0.27□□□□□ -2.45
NUP98P52948 AC012433.1-201ENST00000588916 398 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 MIR6755-201ENST00000619993 66 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.27□□□□□ -2.45
NUP98P52948 RNU6-181P-201ENST00000363225 107 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 SNORD114-12-201ENST00000365400 75 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 MIR644A-201ENST00000385262 94 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 MIR643-201ENST00000385267 97 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 AL590002.1-201ENST00000406554 418 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 MRPS10P1-201ENST00000448483 130 ntBASIC-0.27□□□□□ -2.45
NUP98P52948 MTCO3P38-201ENST00000468910 766 ntBASIC-0.27□□□□□ -2.45
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms