Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 AL049830.1-201ENST00000468034 425 ntBASIC0.61□□□□□ -2.31
RFC3P40938 AC046134.1-201ENST00000514454 666 ntBASIC0.61□□□□□ -2.31
RFC3P40938 RNU6-1114P-201ENST00000516022 107 ntBASIC0.61□□□□□ -2.31
RFC3P40938 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.61□□□□□ -2.31
RFC3P40938 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC0.61□□□□□ -2.31
RFC3P40938 AC245008.1-201ENST00000608123 476 ntBASIC0.61□□□□□ -2.31
RFC3P40938 AL096861.1-201ENST00000610899 123 ntBASIC0.61□□□□□ -2.31
RFC3P40938 Z99129.1-201ENST00000612510 255 ntBASIC0.61□□□□□ -2.31
RFC3P40938 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
RFC3P40938 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
RFC3P40938 SNORA27.1-201ENST00000362604 124 ntBASIC0.6□□□□□ -2.31
RFC3P40938 RNU6-1264P-201ENST00000383891 107 ntBASIC0.6□□□□□ -2.31
RFC3P40938 Y_RNA.405-201ENST00000383979 100 ntBASIC0.6□□□□□ -2.31
RFC3P40938 RNU6-483P-201ENST00000384088 108 ntBASIC0.6□□□□□ -2.31
RFC3P40938 Y_RNA.451-201ENST00000384200 100 ntBASIC0.6□□□□□ -2.31
RFC3P40938 Y_RNA.490-201ENST00000384413 102 ntBASIC0.6□□□□□ -2.31
RFC3P40938 RNU6-342P-201ENST00000384521 104 ntBASIC0.6□□□□□ -2.31
RFC3P40938 Y_RNA.524-201ENST00000384564 100 ntBASIC0.6□□□□□ -2.31
RFC3P40938 Y_RNA.561-201ENST00000384694 100 ntBASIC0.6□□□□□ -2.31
RFC3P40938 RNU6-376P-201ENST00000384731 106 ntBASIC0.6□□□□□ -2.31
RFC3P40938 MIR605-201ENST00000385078 83 ntBASIC0.6□□□□□ -2.31
RFC3P40938 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC0.6□□□□□ -2.31
RFC3P40938 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.6□□□□□ -2.31
RFC3P40938 AC018865.2-201ENST00000423631 129 ntBASIC0.6□□□□□ -2.31
RFC3P40938 USMG5P1-201ENST00000425964 177 ntBASIC0.6□□□□□ -2.31
RFC3P40938 RPEP5-201ENST00000441137 268 ntBASIC0.6□□□□□ -2.31
RFC3P40938 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.6□□□□□ -2.31
RFC3P40938 AC018710.1-201ENST00000506509 158 ntBASIC0.6□□□□□ -2.31
RFC3P40938 RNA5SP20-201ENST00000515976 84 ntBASIC0.6□□□□□ -2.31
RFC3P40938 SNORD111.1-201ENST00000516421 86 ntBASIC0.6□□□□□ -2.31
RFC3P40938 AL358944.1-201ENST00000528537 144 ntBASIC0.6□□□□□ -2.31
RFC3P40938 AC004817.2-201ENST00000561794 651 ntBASIC0.6□□□□□ -2.31
RFC3P40938 NBR2-204ENST00000587322 63 ntBASIC0.6□□□□□ -2.31
RFC3P40938 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.6□□□□□ -2.31
RFC3P40938 ZNF299P-201ENST00000406845 1804 ntBASIC0.59□□□□□ -2.31
RFC3P40938 RNU6-595P-201ENST00000363944 107 ntBASIC0.59□□□□□ -2.31
RFC3P40938 SNORD116-11-201ENST00000383882 92 ntBASIC0.59□□□□□ -2.31
RFC3P40938 Y_RNA.414-201ENST00000384011 101 ntBASIC0.59□□□□□ -2.31
RFC3P40938 Y_RNA.533-201ENST00000384596 114 ntBASIC0.59□□□□□ -2.31
RFC3P40938 Y_RNA.540-201ENST00000384638 111 ntBASIC0.59□□□□□ -2.31
RFC3P40938 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC0.59□□□□□ -2.31
RFC3P40938 RNU6-733P-201ENST00000410759 104 ntBASIC0.59□□□□□ -2.31
RFC3P40938 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC0.59□□□□□ -2.31
RFC3P40938 MTND3P23-201ENST00000431980 347 ntBASIC0.59□□□□□ -2.31
RFC3P40938 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.59□□□□□ -2.31
RFC3P40938 snoU13.25-201ENST00000458945 104 ntBASIC0.59□□□□□ -2.31
RFC3P40938 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC0.59□□□□□ -2.31
RFC3P40938 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.59□□□□□ -2.31
RFC3P40938 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.59□□□□□ -2.31
RFC3P40938 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.59□□□□□ -2.31
RFC3P40938 AL353765.1-201ENST00000605514 183 ntBASIC0.59□□□□□ -2.31
RFC3P40938 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
RFC3P40938 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.59□□□□□ -2.32
RFC3P40938 RNU6-451P-201ENST00000362921 107 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNU6-833P-201ENST00000363486 107 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNY3P3-201ENST00000363816 102 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNU6-407P-201ENST00000365280 104 ntBASIC0.58□□□□□ -2.32
RFC3P40938 SNORD116-9-201ENST00000384000 95 ntBASIC0.58□□□□□ -2.32
RFC3P40938 SNORD116-3-201ENST00000384287 95 ntBASIC0.58□□□□□ -2.32
RFC3P40938 SNORD116-7-201ENST00000384404 95 ntBASIC0.58□□□□□ -2.32
RFC3P40938 SNORD116-5-201ENST00000384462 95 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNU6-110P-201ENST00000384508 104 ntBASIC0.58□□□□□ -2.32
RFC3P40938 MIR526A1-201ENST00000384897 85 ntBASIC0.58□□□□□ -2.32
RFC3P40938 MIR216A-201ENST00000385063 110 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNU6-780P-201ENST00000391030 104 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNU5A-5P-201ENST00000411054 116 ntBASIC0.58□□□□□ -2.32
RFC3P40938 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.58□□□□□ -2.32
RFC3P40938 RPS26P5-201ENST00000418544 335 ntBASIC0.58□□□□□ -2.32
RFC3P40938 USP9YP16-201ENST00000430287 407 ntBASIC0.58□□□□□ -2.32
RFC3P40938 MTND1P26-201ENST00000440488 538 ntBASIC0.58□□□□□ -2.32
RFC3P40938 USP9YP23-201ENST00000455085 407 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNU6-1278P-201ENST00000516130 107 ntBASIC0.58□□□□□ -2.32
RFC3P40938 RNU6-1291P-201ENST00000516591 104 ntBASIC0.58□□□□□ -2.32
RFC3P40938 Y_RNA.704-201ENST00000516851 102 ntBASIC0.58□□□□□ -2.32
RFC3P40938 AC022868.1-201ENST00000517767 391 ntBASIC0.58□□□□□ -2.32
RFC3P40938 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.58□□□□□ -2.32
RFC3P40938 MIR4273-201ENST00000582824 84 ntBASIC0.58□□□□□ -2.32
RFC3P40938 AC104465.1-201ENST00000611365 139 ntBASIC0.58□□□□□ -2.32
RFC3P40938 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.58□□□□□ -2.32
RFC3P40938 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.58□□□□□ -2.32
RFC3P40938 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.57□□□□□ -2.32
RFC3P40938 RNY1P4-201ENST00000384595 115 ntBASIC0.57□□□□□ -2.32
RFC3P40938 MIR520G-201ENST00000385064 90 ntBASIC0.57□□□□□ -2.32
RFC3P40938 MIR891A-201ENST00000401237 79 ntBASIC0.57□□□□□ -2.32
RFC3P40938 AC098934.3-201ENST00000430450 190 ntBASIC0.57□□□□□ -2.32
RFC3P40938 AL035398.1-201ENST00000430869 322 ntBASIC0.57□□□□□ -2.32
RFC3P40938 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.57□□□□□ -2.32
RFC3P40938 Z98949.2-201ENST00000440996 144 ntBASIC0.57□□□□□ -2.32
RFC3P40938 AL137792.2-201ENST00000443484 235 ntBASIC0.57□□□□□ -2.32
RFC3P40938 AC093023.1-201ENST00000547375 507 ntBASIC0.57□□□□□ -2.32
RFC3P40938 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.57□□□□□ -2.32
RFC3P40938 MTND3P12-201ENST00000559068 328 ntBASIC0.57□□□□□ -2.32
RFC3P40938 MIR3192-201ENST00000584920 77 ntBASIC0.57□□□□□ -2.32
RFC3P40938 MIR6513-201ENST00000621188 64 ntBASIC0.57□□□□□ -2.32
RFC3P40938 Y_RNA.36-201ENST00000362602 112 ntBASIC0.56□□□□□ -2.32
RFC3P40938 Y_RNA.336-201ENST00000365307 109 ntBASIC0.56□□□□□ -2.32
RFC3P40938 RNU6-117P-201ENST00000365415 107 ntBASIC0.56□□□□□ -2.32
RFC3P40938 MIR7-2-201ENST00000384970 110 ntBASIC0.56□□□□□ -2.32
RFC3P40938 ELOCP21-201ENST00000412558 336 ntBASIC0.56□□□□□ -2.32
RFC3P40938 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.56□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms