Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-1.07□□□□□ -2.58
CUX1P39880 RNU6-607P-201ENST00000411283 108 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-1.07□□□□□ -2.58
CUX1P39880 MTCO1P27-201ENST00000448269 226 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC-1.07□□□□□ -2.58
CUX1P39880 MTND3P25-201ENST00000509243 135 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 RNU6-1291P-201ENST00000516591 104 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 FRG2DP-202ENST00000566967 323 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 AP000907.4-201ENST00000604143 237 ntBASIC-1.07□□□□□ -2.58
CUX1P39880 RNU6-511P-201ENST00000363496 107 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 RNU6-137P-201ENST00000363680 108 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 SNORD114-25-201ENST00000363742 72 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 Y_RNA.267-201ENST00000364679 109 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 SNORA36A-201ENST00000384221 132 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 MTCO2P33-201ENST00000402100 465 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC-1.08□□□□□ -2.58
CUX1P39880 PIGPP3-201ENST00000425307 415 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-1.08□□□□□ -2.58
CUX1P39880 AC026470.2-201ENST00000561492 181 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 MIR548AR-201ENST00000582191 57 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 MIR4438-201ENST00000585271 93 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 RNU1-29P-201ENST00000606574 126 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 AC144521.1-201ENST00000607148 956 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC-1.08□□□□□ -2.58
CUX1P39880 AL078596.1-201ENST00000624856 447 ntBASIC-1.08□□□□□ -2.58
CUX1P39880 RNU6-777P-201ENST00000364265 104 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 Y_RNA.408-201ENST00000383987 102 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 MIR516B2-201ENST00000385190 85 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 MIR501-201ENST00000390204 84 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 RNU2-54P-201ENST00000410299 190 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 AC243428.1-201ENST00000421099 264 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 SNAP23P1-201ENST00000433229 246 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 MTCO3P8-201ENST00000453691 755 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 MIR18B-201ENST00000454574 71 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 AC108729.2-201ENST00000476543 840 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 AC046134.1-201ENST00000514454 666 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC-1.09□□□□□ -2.58
CUX1P39880 AL139022.2-201ENST00000606934 443 ntBASIC-1.09□□□□□ -2.58
CUX1P39880 RNU5E-10P-201ENST00000363506 118 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 RNY4P6-201ENST00000363667 96 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 RNU6-336P-201ENST00000364891 107 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 Y_RNA.370-201ENST00000365589 108 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 FCF1P9-201ENST00000412546 282 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 USP9YP21-201ENST00000420603 432 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 AL365184.2-201ENST00000431139 435 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 MTND4LP7-201ENST00000431728 294 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 SEPT14P24-201ENST00000447236 180 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 SNORD65B-201ENST00000459126 73 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 Y_RNA.666-201ENST00000516187 112 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC-1.1□□□□□ -2.58
CUX1P39880 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC-1.1□□□□□ -2.58
CUX1P39880 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC-1.1□□□□□ -2.58
CUX1P39880 RNU6-873P-201ENST00000363833 107 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 SNORA26.5-201ENST00000391215 123 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 MIR873-201ENST00000401120 77 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 AC004866.1-201ENST00000411748 78 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-1.1□□□□□ -2.59
CUX1P39880 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-1.1□□□□□ -2.59
CUX1P39880 AL500527.2-201ENST00000454105 95 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 SNORD123-201ENST00000459473 70 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 RNU6-158P-201ENST00000517104 100 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 RNA5SP47-201ENST00000517230 109 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 AC138749.4-201ENST00000563970 127 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 AC090617.3-201ENST00000573670 475 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 MTATP6P2-201ENST00000603319 678 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 OR4H6P-202ENST00000603819 340 ntBASIC-1.1□□□□□ -2.59
CUX1P39880 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-1.1□□□□□ -2.59
CUX1P39880 Y_RNA.28-201ENST00000362554 111 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 RNU4-21P-201ENST00000362802 126 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 SNORA75.1-201ENST00000391130 148 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 AC114491.1-201ENST00000416095 246 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 ZNF114P1-201ENST00000453500 292 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 AC091133.4-201ENST00000511142 308 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 RNU6-430P-201ENST00000517078 107 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 AC023442.1-201ENST00000531247 422 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 MIR4499-201ENST00000584834 69 ntBASIC-1.11□□□□□ -2.59
CUX1P39880 AC073343.1-201ENST00000328239 651 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 MIR148A-201ENST00000362215 68 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 BTBD7P2-201ENST00000441962 620 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 MTCO3P42-201ENST00000509488 518 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 MTCO3P39-201ENST00000514812 518 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 AC006600.1-201ENST00000572529 153 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-1.12□□□□□ -2.59
CUX1P39880 MIR544B-201ENST00000582372 78 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 MIR4264-201ENST00000583520 66 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 AC120024.3-201ENST00000603167 156 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 AP002802.2-201ENST00000605877 235 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 U7.6-201ENST00000610841 64 ntBASIC-1.12□□□□□ -2.59
CUX1P39880 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 RNU6-205P-201ENST00000390858 107 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 SUMO1P3-201ENST00000439961 304 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 ZNF736P1Y-201ENST00000440402 1276 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 RNU7-182P-201ENST00000459009 62 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 RNY4P37-201ENST00000516225 96 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 RNA5SP470-201ENST00000516463 106 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 RNU6-881P-201ENST00000516813 102 ntBASIC-1.13□□□□□ -2.59
CUX1P39880 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC-1.13□□□□□ -2.59
CUX1P39880 AL358944.1-201ENST00000528537 144 ntBASIC-1.13□□□□□ -2.59
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms