Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 AC010999.1-201ENST00000611856 324 ntBASIC0.29□□□□□ -2.36
RPA3P35244 AC099654.12-201ENST00000639868 649 ntBASIC0.29□□□□□ -2.36
RPA3P35244 SNORA27.1-201ENST00000362604 124 ntBASIC0.28□□□□□ -2.36
RPA3P35244 RNU5F-3P-201ENST00000363767 117 ntBASIC0.28□□□□□ -2.36
RPA3P35244 RNU6-1105P-201ENST00000384774 107 ntBASIC0.28□□□□□ -2.36
RPA3P35244 RNU6-994P-201ENST00000410507 111 ntBASIC0.28□□□□□ -2.36
RPA3P35244 AC002350.1-201ENST00000490759 375 ntBASIC0.28□□□□□ -2.36
RPA3P35244 CYCTP-201ENST00000504253 315 ntBASIC0.28□□□□□ -2.36
RPA3P35244 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.28□□□□□ -2.36
RPA3P35244 RN7SKP164-201ENST00000516138 266 ntBASIC0.28□□□□□ -2.36
RPA3P35244 RN7SKP12-201ENST00000516275 143 ntBASIC0.28□□□□□ -2.36
RPA3P35244 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC0.28□□□□□ -2.36
RPA3P35244 AL136317.1-201ENST00000612653 226 ntBASIC0.28□□□□□ -2.36
RPA3P35244 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.28□□□□□ -2.36
RPA3P35244 MIR6516-201ENST00000630554 81 ntBASIC0.28□□□□□ -2.36
RPA3P35244 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.27□□□□□ -2.37
RPA3P35244 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.27□□□□□ -2.37
RPA3P35244 AC121333.1-201ENST00000567488 2709 ntBASIC0.27□□□□□ -2.37
RPA3P35244 RNU6-254P-201ENST00000363377 107 ntBASIC0.27□□□□□ -2.37
RPA3P35244 RNU6-136P-201ENST00000384663 107 ntBASIC0.27□□□□□ -2.37
RPA3P35244 MIR216A-201ENST00000385063 110 ntBASIC0.27□□□□□ -2.37
RPA3P35244 MIR514A2-201ENST00000385131 88 ntBASIC0.27□□□□□ -2.37
RPA3P35244 MIR514A3-201ENST00000385132 88 ntBASIC0.27□□□□□ -2.37
RPA3P35244 RNU4-55P-201ENST00000410731 137 ntBASIC0.27□□□□□ -2.37
RPA3P35244 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC0.27□□□□□ -2.37
RPA3P35244 AC083798.1-201ENST00000472671 131 ntBASIC0.27□□□□□ -2.37
RPA3P35244 AF235103.2-201ENST00000525753 346 ntBASIC0.27□□□□□ -2.37
RPA3P35244 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.27□□□□□ -2.37
RPA3P35244 AP001330.5-201ENST00000607176 411 ntBASIC0.27□□□□□ -2.37
RPA3P35244 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.27□□□□□ -2.37
RPA3P35244 SNORD114-23-201ENST00000363536 72 ntBASIC0.26□□□□□ -2.37
RPA3P35244 RNU6-522P-201ENST00000364497 107 ntBASIC0.26□□□□□ -2.37
RPA3P35244 MIR520C-201ENST00000385005 87 ntBASIC0.26□□□□□ -2.37
RPA3P35244 MIR452-201ENST00000385020 85 ntBASIC0.26□□□□□ -2.37
RPA3P35244 SNORD105-201ENST00000386910 85 ntBASIC0.26□□□□□ -2.37
RPA3P35244 MIR1298-201ENST00000408783 112 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC0.26□□□□□ -2.37
RPA3P35244 MRPS18CP6-201ENST00000423587 223 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AL590632.1-201ENST00000424289 371 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AL137792.2-201ENST00000443484 235 ntBASIC0.26□□□□□ -2.37
RPA3P35244 MTND1P11-201ENST00000456661 876 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AC114811.1-201ENST00000507207 168 ntBASIC0.26□□□□□ -2.37
RPA3P35244 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.26□□□□□ -2.37
RPA3P35244 RNU6-1278P-201ENST00000516130 107 ntBASIC0.26□□□□□ -2.37
RPA3P35244 RNA5SP134-201ENST00000516492 96 ntBASIC0.26□□□□□ -2.37
RPA3P35244 Y_RNA.683-201ENST00000516508 93 ntBASIC0.26□□□□□ -2.37
RPA3P35244 RNU6-1096P-201ENST00000517089 102 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AC134698.4-201ENST00000523451 826 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AC087752.4-201ENST00000605911 462 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AC097520.1-201ENST00000624435 385 ntBASIC0.26□□□□□ -2.37
RPA3P35244 AC027279.3-201ENST00000625055 122 ntBASIC0.26□□□□□ -2.37
RPA3P35244 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
RPA3P35244 SNORD68-201ENST00000363214 84 ntBASIC0.25□□□□□ -2.37
RPA3P35244 RNU6-128P-201ENST00000383976 107 ntBASIC0.25□□□□□ -2.37
RPA3P35244 Y_RNA.409-201ENST00000383990 98 ntBASIC0.25□□□□□ -2.37
RPA3P35244 SNORA75-201ENST00000384158 137 ntBASIC0.25□□□□□ -2.37
RPA3P35244 RNU6-95P-201ENST00000384697 107 ntBASIC0.25□□□□□ -2.37
RPA3P35244 MIR516B2-201ENST00000385190 85 ntBASIC0.25□□□□□ -2.37
RPA3P35244 SNORD111-201ENST00000408139 94 ntBASIC0.25□□□□□ -2.37
RPA3P35244 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.25□□□□□ -2.37
RPA3P35244 PVT1_3.1-201ENST00000620853 95 ntBASIC0.25□□□□□ -2.37
RPA3P35244 MIRLET7D-201ENST00000362263 87 ntBASIC0.24□□□□□ -2.37
RPA3P35244 Y_RNA.372-201ENST00000365599 102 ntBASIC0.24□□□□□ -2.37
RPA3P35244 MIR517A-201ENST00000385001 87 ntBASIC0.24□□□□□ -2.37
RPA3P35244 MIR520G-201ENST00000385064 90 ntBASIC0.24□□□□□ -2.37
RPA3P35244 MTCYBP4-201ENST00000401524 249 ntBASIC0.24□□□□□ -2.37
RPA3P35244 MIR1827-201ENST00000408549 66 ntBASIC0.24□□□□□ -2.37
RPA3P35244 AC046134.1-201ENST00000514454 666 ntBASIC0.24□□□□□ -2.37
RPA3P35244 SNORA74.3-201ENST00000517108 154 ntBASIC0.24□□□□□ -2.37
RPA3P35244 AL358944.1-201ENST00000528537 144 ntBASIC0.24□□□□□ -2.37
RPA3P35244 MIR4300-201ENST00000581016 96 ntBASIC0.24□□□□□ -2.37
RPA3P35244 AC073114.1-201ENST00000612027 490 ntBASIC0.24□□□□□ -2.37
RPA3P35244 DLEU2_5.1-201ENST00000615567 84 ntBASIC0.24□□□□□ -2.37
RPA3P35244 AC007742.2-201ENST00000618226 398 ntBASIC0.24□□□□□ -2.37
RPA3P35244 AC127459.3-201ENST00000624328 466 ntBASIC0.24□□□□□ -2.37
RPA3P35244 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.24□□□□□ -2.37
RPA3P35244 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
RPA3P35244 RNU6-1252P-201ENST00000363054 104 ntBASIC0.23□□□□□ -2.37
RPA3P35244 Y_RNA.231-201ENST00000364358 102 ntBASIC0.23□□□□□ -2.37
RPA3P35244 RNU6-117P-201ENST00000365415 107 ntBASIC0.23□□□□□ -2.37
RPA3P35244 MIR140-201ENST00000385282 100 ntBASIC0.23□□□□□ -2.37
RPA3P35244 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.23□□□□□ -2.37
RPA3P35244 RNA5SP511-201ENST00000410487 115 ntBASIC0.23□□□□□ -2.37
RPA3P35244 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC0.23□□□□□ -2.37
RPA3P35244 PCNPP5-201ENST00000452246 481 ntBASIC0.23□□□□□ -2.37
RPA3P35244 ACA59.1-201ENST00000515966 143 ntBASIC0.23□□□□□ -2.37
RPA3P35244 Y_RNA.695-201ENST00000516715 107 ntBASIC0.23□□□□□ -2.37
RPA3P35244 RNU6-835P-201ENST00000516974 104 ntBASIC0.23□□□□□ -2.37
RPA3P35244 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.23□□□□□ -2.37
RPA3P35244 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.23□□□□□ -2.37
RPA3P35244 MIR5093-201ENST00000583199 100 ntBASIC0.23□□□□□ -2.37
RPA3P35244 RNU6-89P-201ENST00000606519 100 ntBASIC0.23□□□□□ -2.37
RPA3P35244 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.23□□□□□ -2.37
RPA3P35244 AC073544.1-201ENST00000600110 1595 ntBASIC0.23□□□□□ -2.37
RPA3P35244 RNU6-1322P-201ENST00000364309 107 ntBASIC0.22□□□□□ -2.37
RPA3P35244 RNU6-654P-201ENST00000364373 107 ntBASIC0.22□□□□□ -2.37
RPA3P35244 SNORD113.3-201ENST00000364630 78 ntBASIC0.22□□□□□ -2.37
RPA3P35244 SNORD14.1-201ENST00000365609 90 ntBASIC0.22□□□□□ -2.37
RPA3P35244 RNU6-281P-201ENST00000384212 103 ntBASIC0.22□□□□□ -2.37
RPA3P35244 MIR489-201ENST00000384923 84 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 302.5 ms