Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 RNA5SP47-201ENST00000517230 109 ntBASIC-1.49□□□□□ -2.65
HMGA1P17096 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC-1.49□□□□□ -2.65
HMGA1P17096 AC068587.5-201ENST00000528506 175 ntBASIC-1.49□□□□□ -2.65
HMGA1P17096 DEFB108A-201ENST00000530110 222 ntBASIC-1.49□□□□□ -2.65
HMGA1P17096 AC120024.3-201ENST00000603167 156 ntBASIC-1.49□□□□□ -2.65
HMGA1P17096 snoZ196.1-201ENST00000625269 89 ntBASIC-1.49□□□□□ -2.65
HMGA1P17096 Y_RNA.65-201ENST00000362846 100 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 RNU6-137P-201ENST00000363680 108 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 AL445193.1-201ENST00000441183 141 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-1.5□□□□□ -2.65
HMGA1P17096 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC-1.5□□□□□ -2.65
HMGA1P17096 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC-1.5□□□□□ -2.65
HMGA1P17096 RNA5SP33-201ENST00000516687 98 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 RNU6-158P-201ENST00000517104 100 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC-1.5□□□□□ -2.65
HMGA1P17096 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-1.5□□□□□ -2.65
HMGA1P17096 MIR5706-201ENST00000579841 80 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 SNORD92-201ENST00000585078 85 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 AC005332.6-201ENST00000613178 446 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 AC005562.2-201ENST00000618264 111 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 AC027279.3-201ENST00000625055 122 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 AC010332.2-201ENST00000613083 1904 ntBASIC-1.5□□□□□ -2.65
HMGA1P17096 RNU6-490P-201ENST00000362985 107 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 SNORD115-48-201ENST00000364764 76 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 RNY3-201ENST00000365484 102 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 MIR204-201ENST00000385200 110 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 MT-TY-201ENST00000387409 66 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 AC009237.7-201ENST00000447357 229 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-1.51□□□□□ -2.65
HMGA1P17096 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC-1.51□□□□□ -2.65
HMGA1P17096 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 RNU6-583P-201ENST00000516012 92 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 RNU6-760P-201ENST00000516078 97 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 AC138207.3-201ENST00000585289 166 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 OR4H6P-202ENST00000603819 340 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 U4.2-201ENST00000618561 85 ntBASIC-1.51□□□□□ -2.65
HMGA1P17096 Y_RNA.48-201ENST00000362710 103 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 Y_RNA.189-201ENST00000363959 112 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 RNU6-1144P-201ENST00000384247 104 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 RNU6-549P-201ENST00000384433 107 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 RNU6-1122P-201ENST00000384449 107 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 MIR570-201ENST00000384917 97 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 MIR136-201ENST00000385207 82 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 MIR1257-201ENST00000408490 117 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 RNU2-42P-201ENST00000410697 113 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 AC243428.1-201ENST00000421099 264 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 HLA-S-202ENST00000425174 53 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 SNORD123-201ENST00000459473 70 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC-1.52□□□□□ -2.65
HMGA1P17096 AC097462.1-201ENST00000514125 324 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 SLC2A13P1-201ENST00000531560 322 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 MIR4441-201ENST00000582623 100 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 AC011458.1-201ENST00000604034 617 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 AC010975.3-201ENST00000618727 978 ntBASIC-1.52□□□□□ -2.65
HMGA1P17096 AC004866.1-201ENST00000411748 78 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 MTCO1P57-201ENST00000432182 261 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 AL353572.1-201ENST00000442490 417 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 RNU7-73P-201ENST00000458743 63 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 RNU7-62P-201ENST00000458856 62 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 AL355375.2-201ENST00000574825 175 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-1.53□□□□□ -2.65
HMGA1P17096 MIR4438-201ENST00000585271 93 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 AC084368.1-201ENST00000620935 65 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 MIR1246-201ENST00000636535 73 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 U4.7-201ENST00000638126 106 ntBASIC-1.53□□□□□ -2.65
HMGA1P17096 Y_RNA.121-201ENST00000363309 113 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 MIR586-201ENST00000385035 97 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC-1.54□□□□□ -2.66
HMGA1P17096 ZNF114P1-201ENST00000453500 292 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 snoU13.6-201ENST00000458785 104 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 AC026414.1-201ENST00000504046 698 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 RNU6-1007P-201ENST00000516586 107 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC-1.54□□□□□ -2.66
HMGA1P17096 AGGF1P4-201ENST00000568249 801 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 MIR544B-201ENST00000582372 78 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 AL162376.1-201ENST00000624117 175 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 AL078596.1-201ENST00000624856 447 ntBASIC-1.54□□□□□ -2.66
HMGA1P17096 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.54□□□□□ -2.66
HMGA1P17096 Y_RNA.1-201ENST00000352915 104 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 Y_RNA.32-201ENST00000362589 110 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 RNU5E-10P-201ENST00000363506 118 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 RNU4-66P-201ENST00000365199 138 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 RNU6-946P-201ENST00000383878 107 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 RNU5A-6P-201ENST00000384136 116 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 RNU6-125P-201ENST00000384505 107 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC-1.55□□□□□ -2.66
HMGA1P17096 MCFD2P1-201ENST00000417812 300 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 Z98949.2-201ENST00000440996 144 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-1.55□□□□□ -2.66
HMGA1P17096 AC026470.2-201ENST00000561492 181 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 PCMTD1P2-201ENST00000565017 355 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC-1.55□□□□□ -2.66
HMGA1P17096 AC121247.2-201ENST00000604776 136 ntBASIC-1.55□□□□□ -2.66
HMGA1P17096 MPP6-209ENST00000625307 126 ntTSL 5 BASIC-1.55□□□□□ -2.66
HMGA1P17096 SNORD115-42-201ENST00000364273 82 ntBASIC-1.56□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms