Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.12□□□□□ -2.39
LIMS3P0CW19 AC046134.1-201ENST00000514454 666 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 RNU6-237P-201ENST00000515985 71 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 AC087260.1-201ENST00000546118 401 ntTSL 5 BASIC0.12□□□□□ -2.39
LIMS3P0CW19 MIR4452-201ENST00000583004 71 ntBASIC0.12□□□□□ -2.39
LIMS3P0CW19 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.11□□□□□ -2.39
LIMS3P0CW19 RNU6-117P-201ENST00000365415 107 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 RNU6-1264P-201ENST00000383891 107 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 RNA5SP193-201ENST00000410353 107 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.11□□□□□ -2.39
LIMS3P0CW19 AL392103.1-201ENST00000447000 198 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 RNU6-261P-201ENST00000459506 102 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 ACA59.1-201ENST00000515966 143 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC0.11□□□□□ -2.39
LIMS3P0CW19 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 AC015726.2-201ENST00000620112 122 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.11□□□□□ -2.39
LIMS3P0CW19 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.1□□□□□ -2.39
LIMS3P0CW19 U8.5-201ENST00000364528 136 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 AC117470.1-201ENST00000381974 330 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 SNORA2B-201ENST00000384583 137 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC0.1□□□□□ -2.39
LIMS3P0CW19 AC005534.2-201ENST00000431047 433 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 MTND1P4-201ENST00000435196 415 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 MTND3P16-201ENST00000452205 344 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC0.1□□□□□ -2.39
LIMS3P0CW19 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC0.1□□□□□ -2.39
LIMS3P0CW19 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC0.1□□□□□ -2.39
LIMS3P0CW19 AC073648.5-201ENST00000603502 305 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC0.1□□□□□ -2.39
LIMS3P0CW19 AC099654.12-201ENST00000639868 649 ntBASIC0.1□□□□□ -2.39
LIMS3P0CW19 RNU6-654P-201ENST00000364373 107 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 MIR514A2-201ENST00000385131 88 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 MIR514A3-201ENST00000385132 88 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 MIR873-201ENST00000401120 77 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 AL445567.1-201ENST00000439121 144 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 AC083798.1-201ENST00000472671 131 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 RNU7-175P-201ENST00000515915 61 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 SNORA18.7-201ENST00000516910 131 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 MIR4762-201ENST00000585261 75 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 AP001330.5-201ENST00000607176 411 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 5S_rRNA.13-201ENST00000622298 123 ntBASIC0.09□□□□□ -2.4
LIMS3P0CW19 Y_RNA.296-201ENST00000364930 108 ntBASIC0.08□□□□□ -2.4
LIMS3P0CW19 SNORA25.9-201ENST00000365087 128 ntBASIC0.08□□□□□ -2.4
LIMS3P0CW19 MIR1295A-201ENST00000408463 79 ntBASIC0.08□□□□□ -2.4
LIMS3P0CW19 RNA5SP247-201ENST00000411181 105 ntBASIC0.08□□□□□ -2.4
LIMS3P0CW19 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC0.08□□□□□ -2.4
LIMS3P0CW19 RNU6-1114P-201ENST00000516022 107 ntBASIC0.08□□□□□ -2.4
LIMS3P0CW19 AL355073.2-201ENST00000612106 557 ntBASIC0.08□□□□□ -2.4
LIMS3P0CW19 AL138726.1-201ENST00000614873 333 ntBASIC0.08□□□□□ -2.4
LIMS3P0CW19 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.08□□□□□ -2.4
LIMS3P0CW19 MIR103A1-201ENST00000362165 78 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 MIR18A-201ENST00000362310 71 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNU6-254P-201ENST00000363377 107 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 SNORA72.3-201ENST00000365074 132 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 SNORA69-201ENST00000383895 132 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNU6-281P-201ENST00000384212 103 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNU6-136P-201ENST00000384663 107 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 MIR517A-201ENST00000385001 87 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNA5SP299-201ENST00000391203 116 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNU1-139P-201ENST00000391307 165 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 MIR1302-7-201ENST00000408841 72 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNU6-613P-201ENST00000410412 108 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RN7SKP142-201ENST00000411236 328 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 SUMO1P2-201ENST00000452524 304 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 MTCO3P10-201ENST00000455912 772 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RN7SKP287-201ENST00000516546 266 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNU6-405P-201ENST00000516637 110 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 RNU6-1223P-201ENST00000517124 104 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 MIR5696-201ENST00000578474 85 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 AL078603.1-201ENST00000603824 313 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 AC093424.1-201ENST00000604999 338 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 AL162730.1-201ENST00000605734 292 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 AC100812.1-201ENST00000607622 580 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 AC092634.7-201ENST00000621022 103 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 Z69908.1-201ENST00000622603 247 ntBASIC0.07□□□□□ -2.4
LIMS3P0CW19 Y_RNA.168-201ENST00000363740 102 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 RNU6-1322P-201ENST00000364309 107 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 RNU1-133P-201ENST00000364867 167 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 RNU6-95P-201ENST00000384697 107 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 MIR936-201ENST00000401264 98 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 UQCRBP2-201ENST00000447827 297 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 SNORD123-201ENST00000459473 70 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 AC083904.1-201ENST00000487828 231 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 MIR2115-201ENST00000516657 100 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 MTND2P38-201ENST00000522536 667 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 AC093023.1-201ENST00000547375 507 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.06□□□□□ -2.4
LIMS3P0CW19 MTATP6P24-201ENST00000576835 677 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 MIR4431-201ENST00000579990 94 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 AF250324.2-201ENST00000608299 610 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 AL591926.4-201ENST00000616895 298 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 RMST_2.1-201ENST00000617263 136 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 AC097520.1-201ENST00000624435 385 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 MIR4251-201ENST00000635819 61 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 U6.115-201ENST00000636045 103 ntBASIC0.06□□□□□ -2.4
LIMS3P0CW19 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.06□□□□□ -2.4
LIMS3P0CW19 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.05□□□□□ -2.4
LIMS3P0CW19 Y_RNA.231-201ENST00000364358 102 ntBASIC0.05□□□□□ -2.4
LIMS3P0CW19 RNU6-522P-201ENST00000364497 107 ntBASIC0.05□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 228.1 ms