Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SNORA4.2-201ENST00000365313 147 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 Y_RNA.445-201ENST00000384168 102 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 RNU6-376P-201ENST00000384731 106 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 MRPL42P3-201ENST00000401492 326 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 RN7SKP200-201ENST00000410564 320 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 RNU6-250P-201ENST00000516958 103 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 RNU7-128P-201ENST00000517247 62 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 AP000942.3-201ENST00000603702 160 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.86□□□□□ -2.11
HOXC11O43248 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.86□□□□□ -2.11
HOXC11O43248 MTND4P29-201ENST00000503122 1372 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXC11O43248 SNORD114-7-201ENST00000362520 77 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 RNU6-797P-201ENST00000363101 109 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 Y_RNA.230-201ENST00000364348 109 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 Y_RNA.813-201ENST00000364639 102 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 Y_RNA.395-201ENST00000383945 109 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 MIR562-201ENST00000384894 95 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 AL627390.1-201ENST00000396055 340 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 RNU2-54P-201ENST00000410299 190 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 HSPE1P21-201ENST00000438283 308 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXC11O43248 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.85□□□□□ -2.11
HOXC11O43248 AL137792.2-201ENST00000443484 235 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 SNORA25.15-201ENST00000516487 89 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 AC022217.4-201ENST00000604389 163 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 AL121655.1-201ENST00000605811 308 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 AC005828.6-201ENST00000606610 232 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 SNORD58B-201ENST00000607313 66 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 AC127459.3-201ENST00000624328 466 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.85□□□□□ -2.11
HOXC11O43248 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.85□□□□□ -2.11
HOXC11O43248 Y_RNA.80-201ENST00000362996 102 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 RNU6-324P-201ENST00000363957 106 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 RNU4-50P-201ENST00000364361 141 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 RNA5SP190-201ENST00000365222 118 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 Y_RNA.424-201ENST00000384063 103 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 Y_RNA.485-201ENST00000384395 102 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.84□□□□□ -2.11
HOXC11O43248 Y_RNA.639-201ENST00000458981 102 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 RPS26P55-201ENST00000471178 356 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 RNU6-475P-201ENST00000516073 104 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 Y_RNA.713-201ENST00000517013 96 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 RNU2-12P-201ENST00000517216 168 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXC11O43248 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXC11O43248 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXC11O43248 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXC11O43248 AL390123.1-201ENST00000603216 237 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 MIR8054-201ENST00000620877 86 ntBASIC1.84□□□□□ -2.11
HOXC11O43248 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXC11O43248 SNORD42.2-201ENST00000365570 69 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 SNORD14.1-201ENST00000365609 90 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 Y_RNA.535-201ENST00000384612 99 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXC11O43248 AL606517.2-201ENST00000442855 241 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 RPS27P1-201ENST00000450552 247 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 HSPE1P24-201ENST00000450782 238 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 AC093852.1-201ENST00000503587 266 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 RNU6-155P-201ENST00000516347 100 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 AC055872.1-201ENST00000570978 278 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 MIR4285-201ENST00000581001 85 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 AL929325.1-201ENST00000603096 117 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 AC010205.1-201ENST00000616668 449 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 AC007485.1-201ENST00000616755 206 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXC11O43248 MIR6079-201ENST00000635807 62 ntBASIC1.83□□□□□ -2.12
HOXC11O43248 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXC11O43248 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.83□□□□□ -2.12
HOXC11O43248 Y_RNA.101-201ENST00000363154 102 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 SNORD115-30-201ENST00000364117 82 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 SNORA16.1-201ENST00000364597 132 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 RNU6-440P-201ENST00000390882 105 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 RPS20P15-201ENST00000412792 311 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 AL390729.2-201ENST00000416137 156 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 MCFD2P1-201ENST00000417812 300 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 MTND1P14-201ENST00000427400 950 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 U8.20-201ENST00000459445 131 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 AC005908.1-201ENST00000468701 347 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 AL163540.1-201ENST00000485382 386 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 SNORA25.10-201ENST00000515926 124 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 RN7SKP295-201ENST00000517264 153 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
HOXC11O43248 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.82□□□□□ -2.12
HOXC11O43248 AC040926.1-201ENST00000530195 238 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 CBX3P4-201ENST00000538909 354 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.82□□□□□ -2.12
HOXC11O43248 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.82□□□□□ -2.12
HOXC11O43248 AL162424.1-201ENST00000602325 221 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 AC016925.2-201ENST00000605108 242 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 MIR8063-201ENST00000621930 81 ntBASIC1.82□□□□□ -2.12
HOXC11O43248 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HOXC11O43248 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HOXC11O43248 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HOXC11O43248 ICE2P2-201ENST00000483823 2787 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 AC005592.1-201ENST00000566527 1640 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 Y_RNA.124-201ENST00000363339 93 ntBASIC1.81□□□□□ -2.12
HOXC11O43248 Y_RNA.439-201ENST00000384119 94 ntBASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 124.9 ms