Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 Y_RNA.153-201ENST00000363615 91 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 MIR873-201ENST00000401120 77 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 AL158823.1-201ENST00000418441 478 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 AC018634.1-201ENST00000437554 401 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 MRPS10P1-201ENST00000448483 130 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 RNU1-142P-201ENST00000516682 145 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 AC023157.2-201ENST00000540596 141 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 AC005828.6-201ENST00000606610 232 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 SDR42E1P4-201ENST00000620894 481 ntBASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CCDC9Q9Y3X0 SNORA27.1-201ENST00000362604 124 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 SNORD115-30-201ENST00000364117 82 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 Y_RNA.276-201ENST00000364732 109 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 RNU6-1186P-201ENST00000410429 97 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 CR769767.1-201ENST00000436337 346 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 RPS12P2-201ENST00000439728 269 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 MRPS35P2-201ENST00000508242 191 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 RNY3P15-201ENST00000516297 97 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 AC004817.2-201ENST00000561794 651 ntBASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC9Q9Y3X0 RNU6-1019P-201ENST00000364424 107 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 MIR17-201ENST00000385012 84 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 RNA5SP210-201ENST00000391034 120 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 RNA5SP467-201ENST00000391274 118 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 U3.40-201ENST00000408706 208 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 AC010154.1-201ENST00000425857 269 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 AC108729.3-201ENST00000513484 108 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 AC024995.1-201ENST00000523014 93 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 AC136932.1-201ENST00000574771 208 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 MIR4503-201ENST00000582187 83 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 MIR3149-201ENST00000584629 83 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 U6.73-201ENST00000619194 103 ntBASIC3.24□□□□□ -1.89
CCDC9Q9Y3X0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 Y_RNA.452-201ENST00000384202 108 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 AL031003.1-201ENST00000404229 172 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 MIR1287-201ENST00000408492 90 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 AC069257.2-201ENST00000441819 155 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 RNA5SP20-201ENST00000515976 84 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 RNU6-1143P-201ENST00000516125 104 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 RNU6-794P-201ENST00000517261 64 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 AC121758.2-201ENST00000553271 193 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 AL117187.1-201ENST00000555482 181 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 AC110588.1-201ENST00000559699 137 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 MIR4300-201ENST00000581016 96 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 AC090425.1-201ENST00000610007 140 ntBASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC9Q9Y3X0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 RNU6-1318P-201ENST00000365389 103 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 SNORA8-201ENST00000384574 139 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 RNU4-30P-201ENST00000410245 143 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 MTCYBP9-201ENST00000431021 303 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 RPS15AP28-201ENST00000435088 386 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 AC010655.3-201ENST00000478818 450 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 SEPT14P8-201ENST00000508026 178 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 SNORD113-5-201ENST00000607261 78 ntBASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
CCDC9Q9Y3X0 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 SNORD114-7-201ENST00000362520 77 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 SNORA33-201ENST00000363664 130 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-770P-201ENST00000363929 105 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 MIR144-201ENST00000384886 86 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 MIR568-201ENST00000385036 95 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 RPL23AP7-203ENST00000449021 469 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 RPL23AP3-201ENST00000453844 468 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 AC026436.1-201ENST00000510537 270 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 MTCO2P24-201ENST00000515611 426 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 IGLV3-17-201ENST00000519099 244 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 SUB1P4-201ENST00000566062 339 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 AP000942.3-201ENST00000603702 160 ntBASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CCDC9Q9Y3X0 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.19-201ENST00000362462 99 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 Y_RNA.118-201ENST00000363300 101 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 RNU11-5P-201ENST00000391216 129 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 RNA5SP212-201ENST00000391223 107 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 RNU2-7P-201ENST00000410794 178 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 RNU6-1199P-201ENST00000411249 104 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 AC010409.1-201ENST00000487382 476 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 AC097462.1-201ENST00000514125 324 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 RNA5SP76-201ENST00000516277 87 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 MIR5694-201ENST00000581190 76 ntBASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC9Q9Y3X0 AC103810.6-201ENST00000606708 136 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms