Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.67□□□□□ -2.14
VPS28Q9UK41 ELOCP24-201ENST00000456370 334 ntBASIC1.67□□□□□ -2.14
VPS28Q9UK41 AC105758.1-201ENST00000506038 399 ntBASIC1.67□□□□□ -2.14
VPS28Q9UK41 AC073413.2-201ENST00000604332 360 ntBASIC1.67□□□□□ -2.14
VPS28Q9UK41 AL132765.2-201ENST00000610812 351 ntBASIC1.67□□□□□ -2.14
VPS28Q9UK41 AC018630.2-201ENST00000534866 2403 ntBASIC1.67□□□□□ -2.14
VPS28Q9UK41 RNU1-22P-201ENST00000363334 158 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 RNU6-1310P-201ENST00000384153 107 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 RNU6-1031P-201ENST00000384773 107 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 RNY4P36-201ENST00000391116 96 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 MRPL35P1-201ENST00000404272 572 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS28Q9UK41 SUMO1P2-201ENST00000452524 304 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 AC099513.1-201ENST00000490423 301 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 RNU6-970P-201ENST00000516312 107 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 SNORA31.10-201ENST00000516482 106 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 RNU7-172P-201ENST00000517125 64 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.66□□□□□ -2.14
VPS28Q9UK41 AL442163.3-201ENST00000554110 156 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 AC021506.2-201ENST00000612354 169 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 MTND4LP32-201ENST00000636111 270 ntBASIC1.66□□□□□ -2.14
VPS28Q9UK41 SNORA27.1-201ENST00000362604 124 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 Y_RNA.140-201ENST00000363474 103 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 RNU6-407P-201ENST00000365280 104 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 MIR513A1-201ENST00000385138 129 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 RNU6-440P-201ENST00000390882 105 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 RN7SKP101-201ENST00000411376 320 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.65□□□□□ -2.15
VPS28Q9UK41 AC018865.2-201ENST00000423631 129 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 AC099799.1-201ENST00000439809 192 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 AC027119.1-201ENST00000440877 241 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 AC091951.2-201ENST00000500762 203 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 RNA5SP20-201ENST00000515976 84 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 RNU6-902P-201ENST00000517212 91 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 AP002001.1-203ENST00000534002 267 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 RPL21P9-201ENST00000556149 474 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 U6.115-201ENST00000636045 103 ntBASIC1.65□□□□□ -2.15
VPS28Q9UK41 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.65□□□□□ -2.15
VPS28Q9UK41 Y_RNA.70-201ENST00000362886 110 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 RNU6-490P-201ENST00000362985 107 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 Y_RNA.303-201ENST00000364998 94 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 RNA5SP363-201ENST00000365072 115 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 Y_RNA.605-201ENST00000410577 105 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 AC093019.1-201ENST00000443135 252 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS28Q9UK41 AC019176.1-201ENST00000518519 225 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS28Q9UK41 MIR3937-201ENST00000580135 106 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 AC040896.1-201ENST00000613819 479 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.64□□□□□ -2.15
VPS28Q9UK41 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
VPS28Q9UK41 RNU6-457P-201ENST00000363999 107 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 Y_RNA.314-201ENST00000365114 102 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 RNY3P4-201ENST00000384428 101 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 RNU6-1065P-201ENST00000384513 106 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 SNORD116-29-201ENST00000384516 83 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 SNORA67.5-201ENST00000391036 107 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 SNORA17.3-201ENST00000391159 129 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 AL034345.1-201ENST00000407768 123 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 FCF1P4-201ENST00000448326 183 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 Y_RNA.718-201ENST00000517110 102 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS28Q9UK41 SNORD53B-201ENST00000577887 78 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 AL162424.1-201ENST00000602325 221 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 AL390123.1-201ENST00000603216 237 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 AP001485.1-201ENST00000604799 199 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 AL121890.5-201ENST00000620848 304 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 MIR6079-201ENST00000635807 62 ntBASIC1.63□□□□□ -2.15
VPS28Q9UK41 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
VPS28Q9UK41 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNU6-454P-201ENST00000364292 107 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNU6-1040P-201ENST00000383974 107 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 MIR562-201ENST00000384894 95 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 MIR559-201ENST00000385188 96 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 MIR628-201ENST00000385229 95 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNU6-1009P-201ENST00000390996 107 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 MIR873-201ENST00000401120 77 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 MTCO2P27-201ENST00000420740 428 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 MRPS18CP6-201ENST00000423587 223 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNU7-169P-201ENST00000459456 61 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 FGF7P4-201ENST00000509595 295 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNU6-408P-201ENST00000515910 100 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNU6-1278P-201ENST00000516130 107 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNA5SP458-201ENST00000516188 119 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 RNU6-875P-201ENST00000516488 106 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS28Q9UK41 AL355375.2-201ENST00000574825 175 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 BX248123.2-201ENST00000606318 124 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 AC005828.6-201ENST00000606610 232 ntBASIC1.62□□□□□ -2.15
VPS28Q9UK41 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.61□□□□□ -2.15
VPS28Q9UK41 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS28Q9UK41 RNA5SP259-201ENST00000365541 109 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 RNU6-376P-201ENST00000384731 106 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 RPS27P16-201ENST00000425758 201 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 PGBD4P5-201ENST00000445958 426 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 MTND5P20-201ENST00000448677 143 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 RNU6-911P-201ENST00000516523 104 ntBASIC1.61□□□□□ -2.15
VPS28Q9UK41 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms