Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 RAB28P5-201ENST00000427490 651 ntBASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 RNU6-1046P-201ENST00000516538 107 ntBASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 AC023442.1-201ENST00000531247 422 ntBASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 U6.92-201ENST00000636464 89 ntBASIC1.91□□□□□ -2.1
LIMA1Q9UHB6 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.1
LIMA1Q9UHB6 MIR410-201ENST00000362222 80 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.27-201ENST00000362540 103 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 AC117470.1-201ENST00000381974 330 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.422-201ENST00000384054 114 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.455-201ENST00000384230 98 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 RNA5SP467-201ENST00000391274 118 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 AC019129.1-201ENST00000403786 261 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 RNU6-130P-201ENST00000411112 103 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 AL445685.2-201ENST00000422551 342 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 U8.20-201ENST00000459445 131 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 RPS29P21-201ENST00000496272 170 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 AC093852.1-201ENST00000503587 266 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 RNA5SP182-201ENST00000516064 82 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 RNU6-327P-201ENST00000516270 127 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 RNU6-764P-201ENST00000516396 105 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 RNU6-1012P-201ENST00000516606 109 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 PART1_1.1-201ENST00000611761 217 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 AL138825.1-201ENST00000618587 192 ntBASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
LIMA1Q9UHB6 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 SNORA63D-201ENST00000364359 132 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 SNORD14.1-201ENST00000365609 90 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 RNU6-926P-201ENST00000384075 107 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 SNORD78.2-201ENST00000391076 69 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 MIR548F4-201ENST00000408515 105 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AC069257.2-201ENST00000441819 155 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 FCF1P4-201ENST00000448326 183 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 SNORD65B-201ENST00000459126 73 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 RPL26P26-201ENST00000480251 434 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 RPL23AP63-201ENST00000498752 471 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.715-201ENST00000517082 110 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 RNA5SP437-201ENST00000517249 129 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AC022616.4-201ENST00000522985 181 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AC024995.1-201ENST00000523014 93 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AP002001.1-203ENST00000534002 267 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AL137100.2-201ENST00000555786 315 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 AL021879.1-201ENST00000611756 288 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 MIR3674-201ENST00000636576 68 ntBASIC1.89□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.145-201ENST00000363527 102 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.389-201ENST00000383924 113 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.458-201ENST00000384240 102 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 RNA5SP323-201ENST00000391094 133 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 RNU2-7P-201ENST00000410794 178 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 RPEP5-201ENST00000441137 268 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 HMGN1P10-201ENST00000474557 553 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 AC010655.3-201ENST00000478818 450 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 RNU6-408P-201ENST00000515910 100 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.720-201ENST00000517166 92 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 MIR3122-201ENST00000577243 73 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 AC008737.2-201ENST00000599446 118 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 AC124312.5-201ENST00000604451 268 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 RAC1P9-201ENST00000604990 392 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 AC103810.8-201ENST00000607347 118 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 AC011476.5-201ENST00000615594 130 ntBASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.88□□□□□ -2.11
LIMA1Q9UHB6 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 MIR1252-201ENST00000408861 65 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 MTCO3P19-201ENST00000415864 321 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 EBAG9P1-201ENST00000418955 543 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 SDAD1P3-201ENST00000427380 333 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 MTATP8P1-201ENST00000467115 207 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 AC010598.1-201ENST00000510378 103 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 MIR3684-201ENST00000579779 74 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 AC136443.5-201ENST00000603741 370 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 AL359075.3-201ENST00000613288 217 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 AC006435.5-201ENST00000624486 112 ntBASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.87□□□□□ -2.11
LIMA1Q9UHB6 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.86□□□□□ -2.11
LIMA1Q9UHB6 Y_RNA.424-201ENST00000384063 103 ntBASIC1.86□□□□□ -2.11
LIMA1Q9UHB6 RNU6-439P-201ENST00000384188 106 ntBASIC1.86□□□□□ -2.11
LIMA1Q9UHB6 snosnR66.1-201ENST00000391095 99 ntBASIC1.86□□□□□ -2.11
LIMA1Q9UHB6 RNU6-101P-201ENST00000410323 104 ntBASIC1.86□□□□□ -2.11
LIMA1Q9UHB6 RNA5SP475-201ENST00000410568 110 ntBASIC1.86□□□□□ -2.11
LIMA1Q9UHB6 AL358176.2-201ENST00000425769 204 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms