Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC090517.2-201ENST00000614966 680 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 MIR6079-201ENST00000635807 62 ntBASIC0.81□□□□□ -2.28
EXOSC4Q9NPD3 AC005592.1-201ENST00000566527 1640 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 RNU5F-3P-201ENST00000363767 117 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 MIR660-201ENST00000385235 97 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 U8.16-201ENST00000391279 133 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 MIR548F5-201ENST00000408421 86 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.594-201ENST00000410373 140 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 RNA5SP118-201ENST00000410385 109 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-1050P-201ENST00000410388 107 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.595-201ENST00000410403 105 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AL139396.1-201ENST00000421137 167 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 UQCRBP2-201ENST00000447827 297 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AC091021.1-201ENST00000468051 388 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 COX6CP14-201ENST00000469580 174 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AC048334.1-201ENST00000477975 159 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AC097462.1-201ENST00000514125 324 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AC046134.1-201ENST00000514454 666 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.670-201ENST00000516255 105 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-947P-201ENST00000516264 106 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 MIR5701-3-201ENST00000578890 82 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 MIR5701-1-201ENST00000585138 82 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AC080078.3-201ENST00000605407 463 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 MIR5701-2-201ENST00000615634 82 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AL513423.1-201ENST00000621695 132 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 AL359757.2-201ENST00000624309 274 ntBASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
EXOSC4Q9NPD3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 SNORD114-2-201ENST00000363953 78 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-879P-201ENST00000364328 108 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RNU4-40P-201ENST00000364351 143 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RNU4-76P-201ENST00000364509 141 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.265-201ENST00000364677 108 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-53P-201ENST00000365367 106 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.490-201ENST00000384413 102 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-136P-201ENST00000384663 107 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 HSPE1P13-201ENST00000451143 297 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RNU7-94P-201ENST00000459576 63 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RPL7P42-201ENST00000481005 679 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AP002001.1-203ENST00000534002 267 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AL121579.1-201ENST00000555129 305 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AC090617.3-201ENST00000573670 475 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AC018638.8-201ENST00000588755 281 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AC080078.2-201ENST00000603766 501 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AL359821.1-201ENST00000605519 182 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 U4.5-201ENST00000617137 123 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AC012676.2-201ENST00000619258 186 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 AC073544.1-201ENST00000600110 1595 ntBASIC0.79□□□□□ -2.28
EXOSC4Q9NPD3 RNY1P16-201ENST00000363063 111 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 Y_RNA.358-201ENST00000365491 99 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-1145P-201ENST00000384246 107 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 MIR222-201ENST00000384992 110 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 AC018865.2-201ENST00000423631 129 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 RPS3AP52-201ENST00000435639 297 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 AC069439.1-201ENST00000494739 167 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 RNA5SP20-201ENST00000515976 84 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 SNORA31.2-201ENST00000516019 134 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-917P-201ENST00000516294 104 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 RNU6-1291P-201ENST00000516591 104 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 AC022868.1-201ENST00000517767 391 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 AC068137.4-201ENST00000638485 296 ntBASIC0.78□□□□□ -2.28
EXOSC4Q9NPD3 SNORA1B-201ENST00000362535 133 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 SNORA27.1-201ENST00000362604 124 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-392P-201ENST00000364926 101 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.364-201ENST00000365532 101 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.404-201ENST00000383978 102 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 Y_RNA.498-201ENST00000384460 102 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 SNORD41-201ENST00000386967 70 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-910P-201ENST00000390844 107 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 MIR548K-201ENST00000408406 116 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC074085.1-201ENST00000413598 418 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 MTCO3P19-201ENST00000415864 321 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 RAB28P5-201ENST00000427490 651 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 PCNPP5-201ENST00000452246 481 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 OR9P1P-201ENST00000496431 281 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC105758.1-201ENST00000506038 399 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC011352.1-201ENST00000512300 793 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 ACA64.5-201ENST00000516207 127 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-1016P-201ENST00000516689 94 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 SNORA70.22-201ENST00000517160 124 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 RNU6-1116P-201ENST00000517269 99 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC018448.1-201ENST00000552843 316 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 RPL21P9-201ENST00000556149 474 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AL162424.1-201ENST00000602325 221 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AL513534.2-201ENST00000603836 250 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC009229.3-201ENST00000608056 282 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC106800.4-201ENST00000614905 153 ntBASIC0.77□□□□□ -2.29
EXOSC4Q9NPD3 AC007014.2-201ENST00000615581 479 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms