Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 AC243428.1-201ENST00000421099 264 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNU7-66P-201ENST00000459469 62 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1110P-201ENST00000516462 101 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNU6-107P-201ENST00000516643 102 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 AL158211.1-201ENST00000566763 763 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 AC011195.1-201ENST00000578177 177 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 AC119751.7-201ENST00000600494 245 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 RNU6-94P-201ENST00000607728 107 ntBASIC0.36□□□□□ -2.35
VCX3AQ9NNX9 MTND5P16-201ENST00000460269 1703 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 SNORA27.1-201ENST00000362604 124 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.135-201ENST00000363439 95 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 RNU6-833P-201ENST00000363486 107 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1085P-201ENST00000363576 107 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 SNORD114-27-201ENST00000363766 70 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 RNA5SP99-201ENST00000364020 114 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 RNU6-392P-201ENST00000364926 101 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 RNU6-407P-201ENST00000365280 104 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1297P-201ENST00000384415 104 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 MTCYBP10-201ENST00000424905 650 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 MTCO2P12-201ENST00000427426 682 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 MTATP6P13-201ENST00000438531 667 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 AC093019.1-201ENST00000443135 252 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 AC010424.1-201ENST00000506336 297 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 RNA5SP20-201ENST00000515976 84 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 Y_RNA.683-201ENST00000516508 93 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 ZNF519P2-201ENST00000557032 169 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 MIR5696-201ENST00000578474 85 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 AL138726.1-201ENST00000614873 333 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 MIR6863-201ENST00000636112 90 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 AC134026.1-201ENST00000623249 2239 ntBASIC0.35□□□□□ -2.35
VCX3AQ9NNX9 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.34□□□□□ -2.35
VCX3AQ9NNX9 RNU6-1264P-201ENST00000383891 107 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 RNU6-163P-201ENST00000384396 106 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 RNU1-139P-201ENST00000391307 165 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 RNA5SP222-201ENST00000411039 105 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 RNU5A-5P-201ENST00000411054 116 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 AC046134.1-201ENST00000514454 666 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 RNU6-1114P-201ENST00000516022 107 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 AC010525.2-201ENST00000590920 195 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 AC124303.1-201ENST00000605703 360 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 AC100810.6-201ENST00000638068 285 ntBASIC0.34□□□□□ -2.36
VCX3AQ9NNX9 MTND5P26-201ENST00000426018 1752 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 RNU6-222P-201ENST00000362438 107 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 SNORA36.2-201ENST00000384004 127 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 MTCO3P40-201ENST00000392516 676 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 DEFB108C-201ENST00000400154 252 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.615-201ENST00000410769 117 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 PIGPP3-201ENST00000425307 415 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 MTND3P23-201ENST00000431980 347 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 SEPT14P3-201ENST00000439401 183 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AL137792.2-201ENST00000443484 235 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AL732372.2-207ENST00000445840 183 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 SEPT14P2-201ENST00000453405 183 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 CYCTP-201ENST00000504253 315 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 SEPT14P4-201ENST00000513445 186 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 SNORA68.3-201ENST00000515906 83 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 RNU7-41P-201ENST00000515917 61 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 RNU6-1278P-201ENST00000516130 107 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.693-201ENST00000516641 110 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 FO082796.1-201ENST00000523795 183 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AC093023.1-201ENST00000547375 507 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AC006362.1-201ENST00000567392 174 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AC120024.3-201ENST00000603167 156 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 Z83818.1-201ENST00000603584 150 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 snoU13.31-201ENST00000607291 104 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AL359880.1-201ENST00000621879 266 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 AC090582.1-201ENST00000636321 199 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.33□□□□□ -2.36
VCX3AQ9NNX9 MIR373-201ENST00000362273 69 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.77-201ENST00000362962 107 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RNU6-117P-201ENST00000365415 107 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.373-201ENST00000365600 103 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.405-201ENST00000383979 100 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.451-201ENST00000384200 100 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RNU6-281P-201ENST00000384212 103 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 SNORA50A-201ENST00000384225 134 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.524-201ENST00000384564 100 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.533-201ENST00000384596 114 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 Y_RNA.561-201ENST00000384694 100 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RNU6-1067P-201ENST00000384752 107 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 MIR520G-201ENST00000385064 90 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RNU6-1001P-201ENST00000411265 100 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RNU7-175P-201ENST00000515915 61 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RN7SKP164-201ENST00000516138 266 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RNU6-256P-201ENST00000516747 97 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 RNU6-1096P-201ENST00000517089 102 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 AC036111.3-201ENST00000526389 112 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 AL358944.1-201ENST00000528537 144 ntBASIC0.32□□□□□ -2.36
VCX3AQ9NNX9 AC023442.1-201ENST00000531247 422 ntBASIC0.32□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 125.8 ms