Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC006435.5-201ENST00000624486 112 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.5□□□□□ -2.17
LIME1Q9H400 U6.108-201ENST00000637764 58 ntBASIC1.5□□□□□ -2.17
LIME1Q9H400 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
LIME1Q9H400 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.49□□□□□ -2.17
LIME1Q9H400 Y_RNA.27-201ENST00000362540 103 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 Y_RNA.361-201ENST00000365515 120 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 Y_RNA.535-201ENST00000384612 99 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 MRPL35P1-201ENST00000404272 572 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.49□□□□□ -2.17
LIME1Q9H400 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 RPL23AP6-201ENST00000446637 472 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 RNU6-625P-201ENST00000459412 107 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 RNU4-77P-201ENST00000516692 156 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 SNORA31.17-201ENST00000516953 127 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 AC024614.2-201ENST00000577584 372 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 MIR3684-201ENST00000579779 74 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 VN1R91P-201ENST00000594377 169 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 AL512598.1-201ENST00000610158 273 ntBASIC1.49□□□□□ -2.17
LIME1Q9H400 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.48□□□□□ -2.17
LIME1Q9H400 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
LIME1Q9H400 Y_RNA.327-201ENST00000365201 102 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.48□□□□□ -2.17
LIME1Q9H400 SNORD78.2-201ENST00000391076 69 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.48□□□□□ -2.17
LIME1Q9H400 AC069257.2-201ENST00000441819 155 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 FCF1P4-201ENST00000448326 183 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 AC027575.1-201ENST00000481064 460 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 RNA5SP437-201ENST00000517249 129 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC1.48□□□□□ -2.17
LIME1Q9H400 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.48□□□□□ -2.17
LIME1Q9H400 AL645939.4-201ENST00000604495 135 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 AL138825.1-201ENST00000618587 192 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 uc_338.22-201ENST00000622722 187 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 AC010615.1-201ENST00000594254 1764 ntBASIC1.48□□□□□ -2.17
LIME1Q9H400 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.48□□□□□ -2.17
LIME1Q9H400 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
LIME1Q9H400 RNU6-1266P-201ENST00000362794 105 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 RNU6-454P-201ENST00000364292 107 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 RNU6-417P-201ENST00000384712 107 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 MIR520A-201ENST00000384862 85 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 MIR628-201ENST00000385229 95 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 Y_RNA.605-201ENST00000410577 105 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 AC004965.1-201ENST00000413033 213 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 SDAD1P3-201ENST00000427380 333 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC1.47□□□□□ -2.17
LIME1Q9H400 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.47□□□□□ -2.17
LIME1Q9H400 SNORD65B-201ENST00000459126 73 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 RNU7-169P-201ENST00000459456 61 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 snoU13.18-201ENST00000459483 104 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 RNU6-1170P-201ENST00000515974 106 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 RNU6-475P-201ENST00000516073 104 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC1.47□□□□□ -2.17
LIME1Q9H400 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC1.47□□□□□ -2.17
LIME1Q9H400 AC084364.2-201ENST00000546924 395 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 AC006600.1-201ENST00000572529 153 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 MIR3122-201ENST00000577243 73 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 SNORA4-201ENST00000584302 138 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 SNORD58B-201ENST00000607313 66 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 AL160413.1-201ENST00000622780 310 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 AL606534.2-204ENST00000635008 178 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 U6.92-201ENST00000636464 89 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 MIR3674-201ENST00000636576 68 ntBASIC1.47□□□□□ -2.17
LIME1Q9H400 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.47□□□□□ -2.17
LIME1Q9H400 AL391987.6-201ENST00000305671 199 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 Y_RNA.39-201ENST00000362620 98 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 RNU1-42P-201ENST00000364033 160 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.46□□□□□ -2.18
LIME1Q9H400 Y_RNA.419-201ENST00000384041 102 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 RNY1P14-201ENST00000384426 108 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
LIME1Q9H400 MIR1253-201ENST00000408273 105 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 MIR1276-201ENST00000408707 83 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.46□□□□□ -2.18
LIME1Q9H400 AC112492.4-201ENST00000456549 352 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.46□□□□□ -2.18
LIME1Q9H400 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.46□□□□□ -2.18
LIME1Q9H400 AC010598.1-201ENST00000510378 103 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 SNORA40.14-201ENST00000516543 86 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 RNU6-107P-201ENST00000516643 102 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 RNU2-12P-201ENST00000517216 168 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
LIME1Q9H400 AL137100.2-201ENST00000555786 315 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.46□□□□□ -2.18
LIME1Q9H400 AC092447.9-201ENST00000603395 144 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 U6.73-201ENST00000619194 103 ntBASIC1.46□□□□□ -2.18
LIME1Q9H400 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
LIME1Q9H400 RNU6-797P-201ENST00000363101 109 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 RNU6-961P-201ENST00000363893 105 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 RNA5SP363-201ENST00000365072 115 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 RNU6-708P-201ENST00000384217 107 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 Y_RNA.460-201ENST00000384255 102 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 Y_RNA.498-201ENST00000384460 102 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 RNA5SP467-201ENST00000391274 118 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 AL355796.1-201ENST00000406706 323 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 MTCO3P19-201ENST00000415864 321 ntBASIC1.45□□□□□ -2.18
LIME1Q9H400 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.45□□□□□ -2.18
LIME1Q9H400 AC096644.2-201ENST00000429278 159 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 163.4 ms