Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 U8.19-201ENST00000459095 133 ntBASIC3.37□□□□□ -1.87
TRAIPQ9BWF2 RNU7-141P-201ENST00000459304 62 ntBASIC3.37□□□□□ -1.87
TRAIPQ9BWF2 AC117454.1-201ENST00000491120 168 ntBASIC3.37□□□□□ -1.87
TRAIPQ9BWF2 AC022080.3-201ENST00000544433 482 ntBASIC3.37□□□□□ -1.87
TRAIPQ9BWF2 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.37□□□□□ -1.87
TRAIPQ9BWF2 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.37□□□□□ -1.87
TRAIPQ9BWF2 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.37□□□□□ -1.87
TRAIPQ9BWF2 RNU6-1048P-201ENST00000364054 107 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 RNU6-117P-201ENST00000365415 107 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 RNU6-144P-201ENST00000383951 107 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 RNU6-651P-201ENST00000411040 105 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 AL135790.2-201ENST00000437701 267 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 RPL23AP54-201ENST00000495129 419 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 RNU7-115P-201ENST00000516433 55 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 AC015720.1-201ENST00000565251 277 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 MIR5094-201ENST00000578766 85 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 RPL12P50-201ENST00000603116 116 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 AL008718.3-201ENST00000610217 321 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 ZNF271P-202ENST00000465539 1970 ntBASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
TRAIPQ9BWF2 RPL21P3-201ENST00000395517 478 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 AL355497.1-201ENST00000406262 551 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 Y_RNA.621-201ENST00000411065 96 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 SNORD116-28-201ENST00000516123 91 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 RNU7-193P-201ENST00000516723 65 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 AC006023.1-201ENST00000603944 259 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 AL033523.1-201ENST00000605153 153 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
TRAIPQ9BWF2 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 MIR22-201ENST00000362190 85 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 RNU6-1019P-201ENST00000364424 107 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 RNU6-200P-201ENST00000364743 107 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 SNORA67.1-201ENST00000364749 141 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 U8.7-201ENST00000364940 136 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 HIST1H2APS3-201ENST00000403259 134 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 MIR1283-2-201ENST00000408621 87 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 AP003357.1-201ENST00000604497 148 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 AC245884.12-201ENST00000615364 59 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.34□□□□□ -1.87
TRAIPQ9BWF2 RNU2-14P-201ENST00000411053 191 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 Y_RNA.626-201ENST00000411288 95 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AC099677.2-201ENST00000436385 175 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AL138752.1-201ENST00000452964 351 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AC233266.1-201ENST00000454518 96 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AL163195.1-201ENST00000496941 348 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 RNU6-1096P-201ENST00000517089 102 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AC024405.2-202ENST00000532731 184 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AC242852.1-201ENST00000612151 96 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AC244015.1-201ENST00000622301 99 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 AC018630.2-201ENST00000534866 2403 ntBASIC3.33□□□□□ -1.88
TRAIPQ9BWF2 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 MIR367-201ENST00000362299 68 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 RNY4P28-201ENST00000365281 93 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 SNORA72-201ENST00000384339 132 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 SNORA36B-201ENST00000410438 131 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 AL139132.1-201ENST00000431587 344 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 RN7SL20P-201ENST00000488827 297 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 SNORA31.25-201ENST00000517242 134 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 AC006386.2-201ENST00000624491 75 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 AC012005.1-201ENST00000624575 75 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 MIR6079-201ENST00000635807 62 ntBASIC3.32□□□□□ -1.88
TRAIPQ9BWF2 AC073325.2-201ENST00000339545 159 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 Y_RNA.304-201ENST00000365011 112 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 RNU6-851P-201ENST00000384565 107 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 SNORA8.3-201ENST00000384679 139 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 SNORA46-201ENST00000384762 135 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 RNA5SP344-201ENST00000411081 104 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 AC127455.1-201ENST00000565496 145 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 AC130289.1-201ENST00000577321 73 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 Y_RNA.802-201ENST00000614892 130 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 AL365265.1-201ENST00000621045 234 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 MIR203B-201ENST00000636080 86 ntBASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.31□□□□□ -1.88
TRAIPQ9BWF2 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 Y_RNA.267-201ENST00000364679 109 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 Y_RNA.297-201ENST00000364950 91 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 SNORD67-201ENST00000390833 111 ntBASIC3.3□□□□□ -1.88
TRAIPQ9BWF2 RNU2-7P-201ENST00000410794 178 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms