Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.19□□□□□ -2.22
SKA3Q8IX90 MIR26B-201ENST00000362251 77 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 RNU6-1297P-201ENST00000384415 104 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 RNU6-950P-201ENST00000384651 107 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 Y_RNA.577-201ENST00000384794 101 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 MIR194-1-201ENST00000384892 85 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 MIR625-201ENST00000385047 85 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 MRPL35P1-201ENST00000404272 572 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC114482.1-201ENST00000418010 247 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 BTF3P4-201ENST00000418852 495 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.18□□□□□ -2.22
SKA3Q8IX90 PCNPP5-201ENST00000452246 481 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 MTCO3P10-201ENST00000455912 772 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 RPL30P15-201ENST00000457129 321 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC099513.1-201ENST00000490423 301 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC105758.1-201ENST00000506038 399 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC097462.1-201ENST00000514125 324 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 RNA5SP445-201ENST00000515889 115 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.18□□□□□ -2.22
SKA3Q8IX90 AP002001.1-203ENST00000534002 267 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC015688.6-201ENST00000577737 104 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AP000942.3-201ENST00000603702 160 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC073413.2-201ENST00000604332 360 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC080078.3-201ENST00000605407 463 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC021506.2-201ENST00000612354 169 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC087588.2-201ENST00000617667 426 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 AC006435.5-201ENST00000624486 112 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 MIR1302-1-201ENST00000637932 143 ntBASIC1.18□□□□□ -2.22
SKA3Q8IX90 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SKA3Q8IX90 Y_RNA.259-201ENST00000364619 101 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 SNORD1A-201ENST00000364968 72 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 RNU6-407P-201ENST00000365280 104 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 MIR513A1-201ENST00000385138 129 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 SNORA69.1-201ENST00000390904 137 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 AL355796.1-201ENST00000406706 323 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.17□□□□□ -2.22
SKA3Q8IX90 AC018865.2-201ENST00000423631 129 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 RPS27P16-201ENST00000425758 201 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.17□□□□□ -2.22
SKA3Q8IX90 AC010598.1-201ENST00000510378 103 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 RN7SKP179-201ENST00000516126 217 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 RNU7-99P-201ENST00000516271 62 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 SNORA31.10-201ENST00000516482 106 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 AL442163.3-201ENST00000554110 156 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 MIR4421-201ENST00000578133 69 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 MIR3937-201ENST00000580135 106 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.17□□□□□ -2.22
SKA3Q8IX90 RNU1-22P-201ENST00000363334 158 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 SNORA72.1-201ENST00000363485 129 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 Y_RNA.142-201ENST00000363491 102 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 SNORA20B-201ENST00000384220 132 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 Y_RNA.498-201ENST00000384460 102 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 RNU6-1031P-201ENST00000384773 107 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 RNU1-78P-201ENST00000391248 165 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 MRPL42P3-201ENST00000401492 326 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 Y_RNA.592-201ENST00000410274 109 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 RNU6-1156P-201ENST00000410365 100 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 SNORD12B-201ENST00000410433 91 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 AP1B1P2-201ENST00000416196 106 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 MRPS18CP6-201ENST00000423587 223 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC1.16□□□□□ -2.22
SKA3Q8IX90 AC245517.4-201ENST00000448601 281 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 RNU1-123P-201ENST00000458950 160 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 AC079140.2-201ENST00000506193 142 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 RNU6-277P-201ENST00000516272 106 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.16□□□□□ -2.22
SKA3Q8IX90 UBE2V2P2-201ENST00000587677 504 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 AC040896.1-201ENST00000613819 479 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 AC133104.2-201ENST00000615272 193 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 MIR8054-201ENST00000620877 86 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.16□□□□□ -2.22
SKA3Q8IX90 MIR3674-201ENST00000636576 68 ntBASIC1.16□□□□□ -2.22
SKA3Q8IX90 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
SKA3Q8IX90 MIR378A-201ENST00000362177 66 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 MIR410-201ENST00000362222 80 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 RNU6-1123P-201ENST00000362347 106 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 SNORA7.1-201ENST00000363750 139 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 MIR758-201ENST00000390227 88 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 RNY4P36-201ENST00000391116 96 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 MTCYBP4-201ENST00000401524 249 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 RN7SKP200-201ENST00000410564 320 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 AC004965.1-201ENST00000413033 213 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 MTND4P28-201ENST00000426217 387 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.15□□□□□ -2.23
SKA3Q8IX90 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.15□□□□□ -2.23
SKA3Q8IX90 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 AC027119.1-201ENST00000440877 241 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 AC009474.2-201ENST00000451383 136 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 RNU7-94P-201ENST00000459576 63 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 RNU7-172P-201ENST00000517125 64 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 MIR2355-201ENST00000517199 87 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 AL390123.1-201ENST00000603216 237 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 MTND4LP32-201ENST00000636111 270 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
SKA3Q8IX90 AC018630.2-201ENST00000534866 2403 ntBASIC1.15□□□□□ -2.23
SKA3Q8IX90 SNORA27.1-201ENST00000362604 124 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 RNY3P11-201ENST00000364153 102 ntBASIC1.14□□□□□ -2.23
SKA3Q8IX90 RNU6-454P-201ENST00000364292 107 ntBASIC1.14□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 213.3 ms