Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 MTND5P16-201ENST00000460269 1703 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 RNU6-1080P-201ENST00000383982 107 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 MIR499A-201ENST00000384903 122 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 AL355796.1-201ENST00000406706 323 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 RNU7-172P-201ENST00000517125 64 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 CYCSP23-201ENST00000519781 313 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 MIR6504-201ENST00000613520 61 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 MIR3688-2-201ENST00000636963 87 ntBASIC0.92□□□□□ -2.26
TRIM40Q6P9F5 MIR96-201ENST00000362288 78 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 RNU1-124P-201ENST00000363861 145 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 RNU6-1264P-201ENST00000383891 107 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 SNORA20B-201ENST00000384220 132 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.453-201ENST00000384223 109 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 Y_RNA.516-201ENST00000384541 124 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 MIR329-1-201ENST00000385028 80 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 MRPL35P3-201ENST00000421557 364 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 EIF1P2-201ENST00000428233 350 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 RPS23P4-201ENST00000487908 423 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 AC018710.1-201ENST00000506509 158 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 RNU4-49P-201ENST00000516080 140 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 MIR4778-201ENST00000577635 80 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 MIR5701-3-201ENST00000578890 82 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 MIR3684-201ENST00000579779 74 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 MIR5701-1-201ENST00000585138 82 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 HSPE1P19-201ENST00000603327 295 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 MIR5701-2-201ENST00000615634 82 ntBASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.91□□□□□ -2.26
TRIM40Q6P9F5 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 RNU6-199P-201ENST00000362954 107 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 RNU6-424P-201ENST00000384367 105 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 MIR653-201ENST00000385279 96 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 MIR190B-201ENST00000401119 79 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 MTCYBP4-201ENST00000401524 249 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 ELOCP21-201ENST00000412558 336 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 AL589823.1-201ENST00000429577 183 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 UQCRBP2-201ENST00000447827 297 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 MTND5P5-201ENST00000503764 376 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 RPL21P9-201ENST00000556149 474 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 AC018462.2-201ENST00000605375 395 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 GHRLOS.1-201ENST00000610995 70 ntBASIC0.9□□□□□ -2.27
TRIM40Q6P9F5 Y_RNA.226-201ENST00000364337 114 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 Y_RNA.265-201ENST00000364677 108 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 Y_RNA.318-201ENST00000365131 97 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 Y_RNA.364-201ENST00000365532 101 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 MIR562-201ENST00000384894 95 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 MIR222-201ENST00000384992 110 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 SNORD115-47-201ENST00000391226 86 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 RNA5SP247-201ENST00000411181 105 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC018865.2-201ENST00000423631 129 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 CALM2P4-201ENST00000430810 426 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC091021.1-201ENST00000468051 388 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC105758.1-201ENST00000506038 399 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC026782.1-201ENST00000512952 449 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 SNORA31.2-201ENST00000516019 134 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 SNORA31.4-201ENST00000516049 129 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 Y_RNA.682-201ENST00000516457 100 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 RNA5SP168-201ENST00000516642 112 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 RNU6-1016P-201ENST00000516689 94 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 RNU2-56P-201ENST00000516826 190 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 SNORA70.22-201ENST00000517160 124 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC091178.2-201ENST00000584401 117 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC136443.5-201ENST00000603741 370 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC005014.2-201ENST00000607795 599 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC090517.2-201ENST00000614966 680 ntBASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
TRIM40Q6P9F5 AC073544.1-201ENST00000600110 1595 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 SNORA27.1-201ENST00000362604 124 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU6-407P-201ENST00000365280 104 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU6-1145P-201ENST00000384246 107 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 SNORD41-201ENST00000386967 70 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU6-700P-201ENST00000391043 107 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 U8.16-201ENST00000391279 133 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU6-1054P-201ENST00000411293 104 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU6-329P-201ENST00000459618 107 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 OR9P1P-201ENST00000496431 281 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 AC074133.1-201ENST00000515696 183 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNA5SP20-201ENST00000515976 84 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU7-28P-201ENST00000516759 62 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU6-341P-201ENST00000516973 96 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 AC105029.1-201ENST00000520250 669 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 AC090049.2-201ENST00000550377 109 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 AL357075.2-201ENST00000614906 189 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.88□□□□□ -2.27
TRIM40Q6P9F5 RNU4-79P-201ENST00000362764 141 ntBASIC0.87□□□□□ -2.27
TRIM40Q6P9F5 Y_RNA.191-201ENST00000363972 113 ntBASIC0.87□□□□□ -2.27
TRIM40Q6P9F5 Y_RNA.267-201ENST00000364679 109 ntBASIC0.87□□□□□ -2.27
TRIM40Q6P9F5 RNU1-93P-201ENST00000364704 169 ntBASIC0.87□□□□□ -2.27
TRIM40Q6P9F5 RNU6-593P-201ENST00000364716 112 ntBASIC0.87□□□□□ -2.27
TRIM40Q6P9F5 SNORD114-22-201ENST00000365423 72 ntBASIC0.87□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms