Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC-0.57□□□□□ -2.5
USF3Q68DE3 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC-0.57□□□□□ -2.5
USF3Q68DE3 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC-0.57□□□□□ -2.5
USF3Q68DE3 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-137P-201ENST00000363680 108 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-236P-201ENST00000363886 106 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU4-84P-201ENST00000364200 139 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-934P-201ENST00000365154 107 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 Y_RNA.413-201ENST00000384007 102 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-187P-201ENST00000384139 106 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 MTCO2P33-201ENST00000402100 465 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 MIR1298-201ENST00000408783 112 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC-0.57□□□□□ -2.5
USF3Q68DE3 AL117339.3-201ENST00000418733 162 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 USP9YP21-201ENST00000420603 432 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 ZNF736P7Y-201ENST00000425158 820 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 Y_RNA.754-201ENST00000476024 102 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 MTCO3P27-201ENST00000514397 196 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-344P-201ENST00000516635 111 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-58P-201ENST00000517143 103 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 MIR4771-2-201ENST00000577758 74 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 MIR4771-1-201ENST00000582617 74 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 AC087683.1-201ENST00000591187 441 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC-0.57□□□□□ -2.5
USF3Q68DE3 AL139286.2-201ENST00000606838 396 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 Y_RNA.790-201ENST00000614282 102 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 Y_RNA.782-201ENST00000614695 102 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-0.57□□□□□ -2.5
USF3Q68DE3 MIR499B-201ENST00000636498 73 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 MIR198-201ENST00000637333 62 ntBASIC-0.57□□□□□ -2.5
USF3Q68DE3 RNU6-336P-201ENST00000364891 107 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AC117470.1-201ENST00000381974 330 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU6-10P-201ENST00000384036 107 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 SNORA51.10-201ENST00000384418 136 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AL049545.1-201ENST00000401856 572 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RPL21P38-201ENST00000418090 167 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AC012306.1-201ENST00000423267 114 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC-0.58□□□□□ -2.5
USF3Q68DE3 RPS29P27-201ENST00000463711 170 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC-0.58□□□□□ -2.5
USF3Q68DE3 MTND3P25-201ENST00000509243 135 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 SCARNA11.2-201ENST00000517183 154 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC-0.58□□□□□ -2.5
USF3Q68DE3 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.58□□□□□ -2.5
USF3Q68DE3 AP000811.1-201ENST00000603803 651 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU1-29P-201ENST00000606574 126 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AC091304.9-201ENST00000612091 226 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 Six3os1_7.1-201ENST00000621512 201 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 SNORA36.1-201ENST00000363424 132 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 Y_RNA.267-201ENST00000364679 109 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU6-354P-201ENST00000383862 107 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU6-1286P-201ENST00000383871 107 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU6-207P-201ENST00000384137 107 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU6-610P-201ENST00000384264 107 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 MIR15B-201ENST00000385045 98 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 MIR136-201ENST00000385207 82 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU6-1093P-201ENST00000391194 107 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 MIR5706-201ENST00000579841 80 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AP001836.1-201ENST00000604675 523 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC-0.58□□□□□ -2.5
USF3Q68DE3 MIR6740-201ENST00000618268 113 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 AC139792.3-201ENST00000623525 224 ntBASIC-0.58□□□□□ -2.5
USF3Q68DE3 RNU6-428P-201ENST00000362942 107 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 RNU6-883P-201ENST00000384597 107 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 MIR516B2-201ENST00000385190 85 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 SNORD83B-201ENST00000386745 93 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 MIR196A1-201ENST00000388006 70 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 AC008134.1-201ENST00000420943 193 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-0.59□□□□□ -2.5
USF3Q68DE3 AC010975.2-201ENST00000427781 588 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 AC079354.2-201ENST00000453523 154 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-0.59□□□□□ -2.5
USF3Q68DE3 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-0.59□□□□□ -2.5
USF3Q68DE3 SCARNA17-201ENST00000516183 144 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 RNU6-504P-201ENST00000516568 104 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC-0.59□□□□□ -2.5
USF3Q68DE3 SNORD92-201ENST00000585078 85 ntBASIC-0.59□□□□□ -2.5
USF3Q68DE3 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.6□□□□□ -2.5
USF3Q68DE3 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.6□□□□□ -2.5
USF3Q68DE3 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.6□□□□□ -2.5
USF3Q68DE3 RNU6-135P-201ENST00000516769 101 ntBASIC-0.6□□□□□ -2.5
USF3Q68DE3 RNU6-685P-201ENST00000517088 95 ntBASIC-0.6□□□□□ -2.5
USF3Q68DE3 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC-0.6□□□□□ -2.5
USF3Q68DE3 AC072039.2-201ENST00000608883 439 ntBASIC-0.6□□□□□ -2.5
USF3Q68DE3 AL139418.1-201ENST00000613613 177 ntBASIC-0.6□□□□□ -2.5
USF3Q68DE3 AC005592.1-201ENST00000566527 1640 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 SNORD115-8-201ENST00000363856 82 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 Y_RNA.203-201ENST00000364106 102 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 SNORD115-38-201ENST00000365037 82 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 RNU6-811P-201ENST00000384069 107 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 SNORA3B-201ENST00000391305 131 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 BTBD7P2-201ENST00000441962 620 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 MTND2P30-201ENST00000456663 382 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 RPL39P34-201ENST00000477141 156 ntBASIC-0.6□□□□□ -2.51
USF3Q68DE3 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC-0.6□□□□□ -2.51
USF3Q68DE3 RNU6-1236P-201ENST00000517080 99 ntBASIC-0.6□□□□□ -2.51
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms