Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MTCO1P5-201ENST00000433573 344 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 MRPS10P1-201ENST00000448483 130 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.58□□□□□ -2
VPS53Q5VIR6 RNU7-14P-201ENST00000459331 62 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.58□□□□□ -2
VPS53Q5VIR6 MIR449C-201ENST00000516047 92 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 RNA5SP137-201ENST00000516833 135 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 RNU6-667P-201ENST00000517186 102 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 AC022616.8-201ENST00000533569 253 ntBASIC2.58□□□□□ -2
VPS53Q5VIR6 AC009487.4-201ENST00000624969 3585 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 SNORD31B-201ENST00000364977 69 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 MIR548B-201ENST00000385247 97 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.57□□□□□ -2
VPS53Q5VIR6 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.57□□□□□ -2
VPS53Q5VIR6 AL356320.1-201ENST00000429616 163 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 AC114982.1-201ENST00000469402 321 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 AC091959.1-201ENST00000495857 238 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.57□□□□□ -2
VPS53Q5VIR6 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.57□□□□□ -2
VPS53Q5VIR6 MIR1273D-201ENST00000577266 86 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 MIR3684-201ENST00000579779 74 ntBASIC2.57□□□□□ -2
VPS53Q5VIR6 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS53Q5VIR6 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -2
VPS53Q5VIR6 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.57□□□□□ -2
VPS53Q5VIR6 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
VPS53Q5VIR6 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.56□□□□□ -2
VPS53Q5VIR6 RNU6-545P-201ENST00000362681 104 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 Y_RNA.275-201ENST00000364726 110 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 SNORD23.1-201ENST00000408212 104 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 MIR1185-2-201ENST00000408687 86 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 RNA5SP425-201ENST00000410336 112 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.56□□□□□ -2
VPS53Q5VIR6 Z98949.2-201ENST00000440996 144 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 AC074290.1-201ENST00000448883 135 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 ATP5EP1-201ENST00000510257 156 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 SNORA27.4-201ENST00000516650 95 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 RNU7-193P-201ENST00000516723 65 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC2.56□□□□□ -2
VPS53Q5VIR6 MIR4753-201ENST00000585119 83 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 AC012640.5-201ENST00000623897 319 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC2.56□□□□□ -2
VPS53Q5VIR6 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.56□□□□□ -2
VPS53Q5VIR6 ANKRD20A9P-201ENST00000457997 2978 ntBASIC2.56□□□□□ -2
VPS53Q5VIR6 AC080100.1-201ENST00000624239 5356 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 Y_RNA.243-201ENST00000364481 109 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 RNU6-200P-201ENST00000364743 107 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 SNORA40.19-201ENST00000390846 128 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 RNU6-1248P-201ENST00000391096 64 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 U3.40-201ENST00000408706 208 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 RNU2-14P-201ENST00000411053 191 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.55□□□□□ -2
VPS53Q5VIR6 SUMO1P2-201ENST00000452524 304 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 AC016925.1-201ENST00000458303 298 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 RNU6-436P-201ENST00000516171 114 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 Y_RNA.700-201ENST00000516806 100 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.55□□□□□ -2
VPS53Q5VIR6 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.55□□□□□ -2
VPS53Q5VIR6 MIR4643-201ENST00000577473 78 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 AC078899.2-201ENST00000595282 212 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 AL031274.2-201ENST00000599419 203 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 AL162424.1-201ENST00000602325 221 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.55□□□□□ -2
VPS53Q5VIR6 AL442067.1-201ENST00000613261 223 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.55□□□□□ -2
VPS53Q5VIR6 MIR6132-201ENST00000622083 109 ntBASIC2.55□□□□□ -2
VPS53Q5VIR6 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.54□□□□□ -2
VPS53Q5VIR6 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.65-201ENST00000362846 100 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.82-201ENST00000363000 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.92-201ENST00000363043 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 SNORD115-30-201ENST00000364117 82 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.235-201ENST00000364412 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.269-201ENST00000364685 89 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 RNU6-740P-201ENST00000364734 105 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.306-201ENST00000365015 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.312-201ENST00000365089 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.322-201ENST00000365151 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.361-201ENST00000365515 120 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 AL137159.1-201ENST00000452808 512 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.650-201ENST00000459002 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 RN7SL429P-201ENST00000479090 223 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 RN7SL489P-201ENST00000486185 223 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 RN7SL327P-201ENST00000488659 223 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.777-201ENST00000516982 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 RPL21P9-201ENST00000556149 474 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 AL512605.2-201ENST00000592972 256 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.771-201ENST00000598668 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 AC005828.6-201ENST00000606610 232 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.54□□□□□ -2
VPS53Q5VIR6 MIR6895-201ENST00000613497 78 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 RN7SL853P-201ENST00000617250 223 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 Y_RNA.789-201ENST00000622480 102 ntBASIC2.54□□□□□ -2
VPS53Q5VIR6 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
VPS53Q5VIR6 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.53□□□□□ -2
VPS53Q5VIR6 RNU6-975P-201ENST00000384296 105 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 AL357139.1-201ENST00000407792 426 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 SNORA11.4-201ENST00000408823 129 ntBASIC2.53□□□□□ -2
VPS53Q5VIR6 AL139156.1-201ENST00000412785 841 ntBASIC2.53□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms