Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 Y_RNA.184-201ENST00000363884 108 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 Y_RNA.194-201ENST00000363985 102 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RNU4-76P-201ENST00000364509 141 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RNU4-75P-201ENST00000364621 146 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 Y_RNA.405-201ENST00000383979 100 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 Y_RNA.451-201ENST00000384200 100 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 Y_RNA.517-201ENST00000384551 106 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 Y_RNA.524-201ENST00000384564 100 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 Y_RNA.561-201ENST00000384694 100 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 POLR2J4-204ENST00000418424 324 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RAB28P5-201ENST00000427490 651 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 MTND5P15-201ENST00000434246 349 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 STAG3L5P-204ENST00000443759 179 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 MTCO2P7-201ENST00000446518 666 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 MRPS10P1-201ENST00000448483 130 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RNU7-94P-201ENST00000459576 63 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RPS27P22-201ENST00000478056 241 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 AC117454.1-201ENST00000491120 168 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 AC010469.2-201ENST00000496412 480 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RNU7-175P-201ENST00000515915 61 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 RNU6-273P-201ENST00000516937 96 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 SNORA70.22-201ENST00000517160 124 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC0.67□□□□□ -2.3
FOXA1P55317 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC0.67□□□□□ -2.3
FOXA1P55317 AC024909.2-201ENST00000553035 286 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 AC245505.1-201ENST00000556398 224 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 MIR4778-201ENST00000577635 80 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 MIR4273-201ENST00000582824 84 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 AL513534.2-201ENST00000603836 250 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 AC108706.1-201ENST00000611053 297 ntBASIC0.67□□□□□ -2.3
FOXA1P55317 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.66□□□□□ -2.3
FOXA1P55317 RNU1-139P-201ENST00000391307 165 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 MTND3P23-201ENST00000431980 347 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 MTND4LP16-201ENST00000440828 295 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC0.66□□□□□ -2.3
FOXA1P55317 SNORA31.2-201ENST00000516019 134 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 RNU6-107P-201ENST00000516643 102 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.66□□□□□ -2.3
FOXA1P55317 AL590705.4-201ENST00000532209 134 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 AL162424.1-201ENST00000602325 221 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 AC068137.4-201ENST00000638485 296 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 ZNF299P-201ENST00000406845 1804 ntBASIC0.66□□□□□ -2.3
FOXA1P55317 RNU6-222P-201ENST00000362438 107 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 RNU6-1059P-201ENST00000363752 98 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 RNU6-595P-201ENST00000363944 107 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 RNU6-596P-201ENST00000365395 98 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 RNU6-281P-201ENST00000384212 103 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC004941.2-201ENST00000427009 228 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC048334.1-201ENST00000477975 159 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC105758.1-201ENST00000506038 399 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC010598.1-201ENST00000510378 103 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC097462.1-201ENST00000514125 324 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 RNU6-864P-201ENST00000516256 108 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 Y_RNA.683-201ENST00000516508 93 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 RNU6-1088P-201ENST00000516850 104 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC109635.3-201ENST00000529536 185 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 MIR4661-201ENST00000582720 75 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 GHRLOS.1-201ENST00000610995 70 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC048344.4-201ENST00000619744 527 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 AC006435.5-201ENST00000624486 112 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 MIR6079-201ENST00000635807 62 ntBASIC0.65□□□□□ -2.31
FOXA1P55317 Y_RNA.36-201ENST00000362602 112 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-199P-201ENST00000362954 107 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU1-36P-201ENST00000365130 165 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 Y_RNA.402-201ENST00000383972 102 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-424P-201ENST00000384367 105 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 MIR653-201ENST00000385279 96 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 SNORD41-201ENST00000386967 70 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-910P-201ENST00000390844 107 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-1148P-201ENST00000410992 104 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-373P-201ENST00000411247 98 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 USMG5P1-201ENST00000425964 177 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.64□□□□□ -2.31
FOXA1P55317 DLGAP5P1-201ENST00000430307 464 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 CALM2P4-201ENST00000430810 426 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 MTND3P21-201ENST00000433774 331 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 MTND2P22-201ENST00000444325 1033 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-1132P-201ENST00000459214 107 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-1114P-201ENST00000516022 107 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 SNORA31.4-201ENST00000516049 129 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNA5SP168-201ENST00000516642 112 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 RNU6-1314P-201ENST00000517139 104 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.64□□□□□ -2.31
FOXA1P55317 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.64□□□□□ -2.31
FOXA1P55317 SNORA28-201ENST00000606769 126 ntBASIC0.64□□□□□ -2.31
FOXA1P55317 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
FOXA1P55317 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.63□□□□□ -2.31
FOXA1P55317 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
FOXA1P55317 Y_RNA.48-201ENST00000362710 103 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU4-79P-201ENST00000362764 141 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 Y_RNA.106-201ENST00000363189 100 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 Y_RNA.265-201ENST00000364677 108 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU1-133P-201ENST00000364867 167 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 SNORA20B-201ENST00000384220 132 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU6-842P-201ENST00000384269 107 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 Y_RNA.490-201ENST00000384413 102 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU6-831P-201ENST00000384548 107 ntBASIC0.63□□□□□ -2.31
FOXA1P55317 RNU6-1105P-201ENST00000384774 107 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms